Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq302911 118 7e-22 seq741633 109 4e-19 seq302910 102 6e-17 seq708045 82.4 5e-11 >seq302911 Length=9965 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 |||||||||| || ||||| | |||| ||| |||| |||| ||||| || |||| | Sbjct 1226 CTTTTTGTATGTTGTAATCTGACAAAGTGCGACCATCTTCCAGCTGTTTGCCAGCAAATA 1285 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | |||||||||||| | || | ||||||||||| || ||| ||||| | Sbjct 1286 TCAGACGCTGCTGATCAGGTGGAATACCTTCTTTGTCTTGAATCTTTGCTTTAACATTTT 1345 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | ||| |||| ||| || ||||| || ||||| || |||||||| || || |||| Sbjct 1346 CAATTGTATCTGAAGGTTCAACTTCCAATGTTATTGTCTTCCCCGTTAATGTCTTCACGA 1405 Query 39710 AGATCTGCATGTC 39722 ||||||||||||| Sbjct 1406 AGATCTGCATGTC 1418 >seq741633 Length=11487 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||||||| | ||| |||| |||||||||| |||||| || || || ||||| | | Sbjct 9550 CCACCTCGCAATCTCAGCACCAGATGCAAAGTGGATTCTTTCTGAATGTTGTAATCAGAC 9491 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| ||| || || |||| |||| | ||| || || | ||| Sbjct 9490 AGGGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATTAGCCTCTGTTGGTCAGGTGGT 9431 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||||| |||| || | | ||| |||| ||| || Sbjct 9430 ATTCCTTCCTTATCCTGAATTTTTGCCTTAACATTCTCAATTGTATCTGAAGCTTCAACA 9371 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || ||||| || || || || |||||||||||| Sbjct 9370 TCCAAAGTTATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCATG 9323 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | ||| || | ||||| ||| ||| || || ||||||||||| | | Sbjct 10234 CCACCACGCAACCTCAGGACAAGATGCAGAGTAGATTCCTTCTGAATATTATAATCAGAC 10175 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| |||| || || || |||| || || | |||||| || | || Sbjct 10174 AAGGTCCGCCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGCGGA 10115 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || || || ||| | || ||| || || | ||| || Sbjct 10114 ATGCCTTCTTTATCCTGGATCTTCGCTTTTACATTCTCTATGGTATCGGATGCTTCTACT 10055 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || ||||| ||||| || || || ||||| || || ||||||||| Sbjct 10054 TCTAATGTAATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATG 10007 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||| | || |||| ||||| ||| ||| || || || || ||||| | Sbjct 11147 GCCACCGCGCAACCTTAGCACCAGATGCAGAGTAGATTCCTTCTGAATGTTGTAATCTGA 11088 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || |||| |||| || | || || || |||| || | ||| |||||||| | || Sbjct 11087 CAGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 11028 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | ||||||||||| || || || | || | | ||||| | ||| |||| Sbjct 11027 AATCCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATGGTGTCCGACGC-CTCCA 10969 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||| ||||| || || | || || |||||||||||||| Sbjct 10968 CTTCCAAGGTAATGGTTTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 10920 >seq302910 Length=12142 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 |||||||||| || ||||| | | | | | |||| || | |||||| || |||| | Sbjct 11150 CTTTTTGTATGTTGTAATCTGAGAGAGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAGA 11209 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 |||| ||||| ||||| | |||| ||||||||||| |||||| ||| | | Sbjct 11210 TTAATCGCTGTTGATCTGGCGGTATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTT 11269 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | |||||||| || || ||||| || |||||||| || || | ||||||||| | Sbjct 11270 CAATTGTGTCTGATGGCTCAACTTCCAATGTTATTGTTTTCCCTGTCAGAGTTTTTACAA 11329 Query 39710 AGATCTGCATG 39720 | ||||||||| Sbjct 11330 AAATCTGCATG 11340 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||| || ||| ||||| || ||||| || || | ||| || |||| Sbjct 3981 AGAACCAAATGTAATGTGGACTCTTTCTGAATATTGTAGTCAGATAAAGTACGCCCATCT 4040 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || ||||||| | | |||||| || | || | ||||||||||| Sbjct 4041 TCCAATTGTTTTCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGAATTCCTTCTTTGTCT 4100 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| || | | | | || |||| ||| || |||| || |||||| Sbjct 4101 TGGATTTTGGCCTTCACATTTTCAATAGTATCTGATGGTTCAACTTCCAGTGTTATTGTT 4160 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || || || || || |||||| Sbjct 4161 TTACCTGTTAATGTCTTGACAAAAATTTGCATG 4193 >seq708045 Length=25632 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39517 TGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGT 39576 || ||||| |||||| || ||||||||||| | ||| || |||| ||||| || Sbjct 10593 TGTAAAGTAGATTCTTTCTGGATATTATAATCAGACAATGTTCGGCCATCTTCCAACTGC 10534 Query 39577 TTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT 39636 || || |||| || | | ||||||||||| ||| | |||||||| || ||||| Sbjct 10533 TTGCCAGCAAATATCAGTCTCTGCTGATCCGGGGGAATTCCTTCTTTATCCTGGATTTTG 10474 Query 39637 TGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTT 39696 ||||| | | | ||| || | ||| || || || || || || || ||||| Sbjct 10473 GCTTTAACATTTTCAATTGTATCCGAAGCTTCTACCTCTAAGGTGATAGTCTTCCCCGTC 10414 Query 39697 AAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || |||||||| Sbjct 10413 AAAGTCTTCACAAATATCTGCAT 10391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 341453223986036