Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq741633 104 2e-17 seq1220047 87.8 2e-12 seq302911 82.4 8e-11 >seq741633 Length=11487 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || || || | || || || || | Sbjct 10236 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACTCTGGAGGTGGAAGCTTCT 10295 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||| |||| ||||| || || ||||| | || ||| Sbjct 10296 GACACCATTGAGAATGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 10355 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || |||||| |||| || | | ||| | || |||||| Sbjct 10356 CAGCGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGAAGGACCTTATCAGATTACAAC 10415 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || ||||||||||| ||| | | ||||| || Sbjct 10416 ATCCAAAAGGAATCTACTCTGCATTTGGTTCTGAGGCTAAGAGGTGG 10462 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||| || | || || || || || Sbjct 11148 ATGCAGATTTTTGTGAAGACTCTTACCGGGAAGACCATTACTCTGGAGGTGGAAGCTTCC 11207 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||||| || || || || |||||| | || ||| Sbjct 11208 GACACAATTGAGAATGTGAAGGCGAAAATCCAAGATAAGGAAGGCATTCCCCCAGATCAA 11267 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||||||| |||| || | || || || ||||| || Sbjct 11268 CAGCGACTCATCTTTGCAGGCAAACAGTTGGAAGATGGACGTACACTTTCGGACTATAAT 11327 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || ||||||||||| ||||||||||| || Sbjct 11328 ATTCAGAAAGAATCCACTCTTCATTTGGTGCTACGTTTGAGAGGTGG 11374 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| || || || |||||||| || | || || || || | Sbjct 9096 ATGCAGATTTTTGTAAAAACTCTTACAGGGAAAACCATAACATTAGAGGTTGAAGCATCT 9155 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| |||||| | || || || || || || | ||||| Sbjct 9156 GACACTATTGAGAATGTAAAAGCAAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 9215 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || |||||||| || || || | ||||| || |||||||| Sbjct 9216 CAGAGATTGATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACTCTTTCAGACTACAAT 9275 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || |||||||||||| | | ||||| ||| Sbjct 9276 ATCCAGAAAGAATCTACACTACATTTGGTGCTGAGGCTCAGAGGAGGC 9323 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || || || |||||||| || || | || || ||||| | Sbjct 10463 AATGCAAATTTTTGTGAAGACACTTACTGGCAAAACAATTACATTGGAAGTTGAGGCATC 10522 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | |||| || || | || ||||| || || || | ||||| Sbjct 10523 TGACACAATTGAAAATGTGAAAGCTAAGATTCAAGATAAAGAAGGCATCCCTCCAGACCA 10582 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || ||||| ||||| || || | | ||| | || ||||| Sbjct 10583 ACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGGACCTTATCTGATTACAA 10642 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||| || |||||| | || ||||||| |||||| Sbjct 10643 CATTCAGAAGGAATCCACTTTGCATTTAGTGCTG 10676 >seq1220047 Length=251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 132874 ACCAAATGCTTGAACATCAAGCAA-GCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAAT 132932 ||||| | ||| |||||| ||| |||||||||| |||| ||||| || || || || Sbjct 133 ACCAACTTCTTATACATCA-GCACCGCAAAGTCGCGGTGCAGACCCTCATCTCTCGATAT 191 Query 132933 GAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAA 132984 || ||||||||||| |||||| ||||| ||||| |||||||| |||||| Sbjct 192 TAGCTCGTTGCTGAAGCACAAGCCAGGCATCAGGCCTCGTTTTTTAAGCCAA 243 >seq302911 Length=9965 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || |||||| | || |||||||| || || | || || ||| | | Sbjct 1014 AATGCAAATATTTGTGAAAACGTTGACTGGCAAAACAATAACATTAGAAGTTGAGCCGTC 955 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | |||| ||| || | || ||||| || ||||| | ||||| Sbjct 954 AGACACAATAGAAAATGTCAAAGCAAAGATTCAGGATAAAGAAGGCATTCCACCAGACCA 895 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| || || |||||| |||| || | || || || || ||||| Sbjct 894 GCAGAGGCTAATTTTTGCAGGGAAACAGTTGGAAGATGGACGGACTCTGTCAGATTACAA 835 Query 38423 CATCCA-AAAGG 38433 || || ||||| Sbjct 834 TATACAGAAAGG 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491435456417280