Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq791531 123 3e-23 seq599987 122 1e-22 >seq791531 Length=8839 Score = 123 bits (136), Expect = 3e-23 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 19216 TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTT 19275 ||| | | ||| |||| |||| ||| || | | ||| ||||| || ||||| | ||| Sbjct 7015 TCAGCAGAATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTC 6956 Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 || ||||| || || || || || |||||||||||||| |||| || ||||| || Sbjct 6955 TCCATAGCAATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTG 6896 Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || ||||| |||| ||||| ||||| || ||||||||||| || || || |||| ||| Sbjct 6895 AACCTTTCAACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACA 6836 Query 19396 TGTTTAATAAAATGTTTTTCATCTGAGGTT 19425 || ||| ||||| |||| || ||||| Sbjct 6835 TGGGAAATGAAATGCCTTTCTTC--AGGTT 6808 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || | |||||| |||||| | ||| ||||| | ||||| || | Sbjct 7339 CCTCATCTCTTGAAATAAGTTCATTGCTAAATGTAAGACCTGGCATTAAACCTCTCTTCT 7280 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| |||| ||||| ||||| |||||||| ||||| || || ||||| | Sbjct 7279 TAAGCCAGAAAATAGCTGCAAAACTGCCAGAGAAGAATATGCCTTCCACAGCAGCAAATG 7220 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 ||| || | ||| || | | ||| | || | |||||| | |||||||| |||| Sbjct 7219 CAATTACACGCTCTGCAAATGTGGCAGATTCATCAGCAATCCACCTGAGTGCCCAGTCAG 7160 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 |||| || ||||||||||||| || || |||| ||| || || Sbjct 7159 CCTTTTTCTTTACACATGGCAAAGTTTCAATAGCATTGAAGAG 7117 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || |||||||||||||||||| | ||||| ||||| || ||||||||||||||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATA 19569 || |||||| |||| || || || || || |||||||| || || ||| | || | | Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTTCTCTCTCAGTAGA 6457 Query 19570 GGTTCCA 19576 ||||||| Sbjct 6456 GGTTCCA 6450 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 || |||||||| || ||||||| ||||||| | ||||| | |||||| ||||| ||||| Sbjct 7608 AGAAGTCTATCAGCAACAAATTCAATATATTTCTTCATAAGATCACAGTTCATGCCTATC 7549 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC--CTCTGAT- 18903 | | ||||| | ||| ||||| | ||||||||||| || || || || | || || Sbjct 7548 ATTGCCACAGGCAATGCCTCTGTCAAGAATTCTTGTTCAATCTTAACAGCATCCCTAATG 7489 Query 18904 ATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACAT 18963 ||| || || | ||||| ||| |||| | | || ||| || ||||| | ||| Sbjct 7488 ATACTA-AT-TATTTCTAT-TTCTGTAGGCTTCTGGACAACATGCTTGAACATAAGGCAT 7432 Query 18964 GCAAAATCACAATGTAGTCCCT 18985 || || ||||| || || |||| Sbjct 7431 GCGAAGTCACAGTGGAGACCCT 7410 >seq599987 Length=38784 Score = 122 bits (134), Expect = 1e-22 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| || || ||||| | |||||||| |||||||||||| || | ||||| || || Sbjct 36365 TTATTTCCACCCTGATCCACATATCTGGAAGTATTGTTATATACACGCAACATAGGAACC 36424 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 | |||||| ||| |||||||||| || | ||| ||||||||| ||| | ||| | Sbjct 36425 AGACCATTGGATGTACCATTGGTGCCAGCAATGTAACTTCCAGCAGCACGGATA----CA 36480 Query 48474 ATTGA----AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || || || || ||||||||||| ||| || || | ||||| | || | || Sbjct 36481 ATGGACGCTAAGGCCAATACCACCTGCAGATTTGGAGATCATGGCACATTGCTTCAAAGT 36540 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||||||| ||||| ||||| || || |||| || || ||||| || Sbjct 36541 ATCATAAATACCTTCAATACTGTCCTCCTTCATGCACAACAGGAAACAGCT 36591 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 47051 CCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATT 47110 |||| |||| |||||||| |||| || |||| | || || | |||||| || || Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171 Query 47111 AAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCT 47170 ||||| |||||||||||||| || || ||||||||||||||||| | | ||| | Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231 Query 47171 TTGTGGTATCTCCCATACTGTTTTATA 47197 || || || ||||| || |||||||| Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTATA 2258 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||||||||| | || | || |||||||||| || ||||||||||| | || Sbjct 15439 TGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAAGGAC 15498 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||| ||||||| ||||| ||||| ||||| || ||||| | ||| Sbjct 15499 TCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGC 15545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552289518110880