Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq516988 170 7e-38 seq1174245 89.7 2e-13 seq516989 89.7 2e-13 >seq516988 Length=1185 Score = 170 bits (188), Expect = 7e-38 Identities = 179/235 (76%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 10055 TCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGAGCGGCGAGATGAAGGAATCGA 10114 ||||| | || || ||||| ||||||||||||||||||||||| || ||||||||| | | Sbjct 1185 TCCGCGTGGCCACCACCGACCGCTACAAGGACAAGGCGAGCGGAGAAATGAAGGAAGCCA 1126 Query 10115 CCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCGAGATCGTCGACGAGTACCTGC 10174 | || ||||||||| || ||||||||||||| | || || || | || ||| |||||| Sbjct 1125 CGGAGTGGCACCGCATCGCCTTCTTCGGCCGCTTGGCAGAAATTGCCGGCGAATACCTGA 1066 Query 10175 GCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCACGCGGAAGTGGCAGGATAACG 10234 ||||| || ||||||||||||||||| | || || |||| ||| || | Sbjct 1065 AGAAGGGTTCGTCGGTCTACATCGAGGGCAAGCTGAAGACTCGCCAGTG---GGAGAAGG 1009 Query 10235 CCGGCCAGGATCGCTACACGACCGAGATCGTCGCCGAGAAGATGCAGATGCTCGG 10289 |||||| | | |||| |||||||||||||| || ||||||||||||| || Sbjct 1008 ATGGCCAGAAACAGTACAGCACCGAGATCGTCGCAGACCAGATGCAGATGCTGGG 954 >seq1174245 Length=209 Score = 89.7 bits (98), Expect = 2e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 2796 CAAGATCATCGCGTTCGCGATCTTCTCGACGCGGCGGCAGGAGGAGATCATCAGGATCAC 2855 |||| | ||||| ||||| |||||||| || || || ||||||||||||| ||||| Sbjct 193 CAAGGTGATCGCCTTCGCCATCTTCTCAACCCGCCGCCAGGAGGAGATCACGCGGATCCG 134 Query 2856 GTGGGCCGACCTCAACGAG-GAGGAGAGCACGCAGATCGTGCGCGACGTGAAGCACCCGC 2914 |||| |||||| ||||| | | || || | | ||||||||| ||||| |||| Sbjct 133 CTGGGACGACCTAGACGAGCGCCGCCAG-GCGGTGCTGGTGCGCGACATGAAGAACCCCG 75 Query 2915 GCAAGAAGATCGGCAACGA--TCAGGAATCGCGGCTCACGCCCGAGGCGCTGGCGATCAT 2972 | |||||||||| ||| | || || | | ||| || |||||| ||||||| | Sbjct 74 GACAGAAGATCGGTAACCACGTCTGG--TGCCACCTCCCGGACGAGGCTTGGGCGATCCT 17 Query 2973 CAAATCGATGCCGC 2986 | |||||||||| Sbjct 16 GCAGTCGATGCCGC 3 >seq516989 Length=1305 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 9961 GACATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAAC 10019 || |||||||||||||||||||||||| |||||||||||||||||||||| || ||||| Sbjct 60 GAAATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCAGAAAC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194506451844936