Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq708045 109 5e-19 seq302910 100 2e-16 seq741633 95.1 1e-14 seq1341392 91.5 1e-13 seq31008 87.8 2e-12 >seq708045 Length=25632 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| |||||||| || || || ||||| || || || ||| || ||| || Sbjct 10388 AAAATGCAGATATTTGTGAAGACTTTGACGGGGAAGACTATCACCTTAGAGGTAGAAGCT 10447 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | || |||||| || ||||| ||| | ||| ||| Sbjct 10448 TCGGATACAATTGAAAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATTCCCCCGGAT 10507 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || |||||||| || ||||| ||||| || ||||||||| ||| || | |||||| Sbjct 10508 CAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAACATTGTCTGATTAT 10567 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || || |||||||||||| | ||| | || |||||| | || || || Sbjct 10568 AATATCCAGAAAGAATCTACTTTACACCTTGTGTTAAGACTCCGTGGTGG 10617 >seq302910 Length=12142 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || |||||||| |||||||| || || ||| ||||| ||| Sbjct 4192 ATGCAAATTTTTGTCAAGACATTAACAGGTAAAACAATAACACTGGAAGTTGAACCATCA 4133 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| ||| | || ||| || Sbjct 4132 GATACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 4073 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || ||||||||||||||| ||| | | || || || Sbjct 4072 CAGAGGCTTATTTTTGCTGGAAAACAATTGGAAGATGGGCGTACTTTATCTGACTACAAT 4013 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| || || | || |||| |||| Sbjct 4012 ATTCAGAAAGAGTCCACATTACATTTGGTTCTAAG 3978 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| | || || ||||| || || ||| || || ||| Sbjct 11339 ATGCAGATTTTTGTAAAAACTCTGACAGGGAAAACAATAACATTGGAAGTTGAGCCATCA 11280 Query 28614 GAGACGGTGGCCGATCT-CAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||||||||| || |||||||| ||| | || |||||| Sbjct 11279 GACACAATTGAAAATGTAAAAGCAAAAATTC-AAGACAAAGAAGGAATACCGCCAGATCA 11221 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| || | |||||||| || |||||| | || ||| | |||| | | ||||| || Sbjct 11220 ACAGCGATTAATCTTTGCTGGTAAACAACTTGAGGATGGAAGAACTCTCTCAGATTACAA 11161 Query 28733 CATTCAAAAAG 28743 ||| ||||||| Sbjct 11160 CATACAAAAAG 11150 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || |||||||| || || ||| |||||| ||| Sbjct 4509 ATGCAAATTTTTGTGAAAACTCTCACTGGTAAAACAATAACTCTGGAAGTGGAACCATCA 4450 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||||| || ||||| || | || |||||| Sbjct 4449 GATACCATAGAAAATGTTAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATCAA 4390 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || ||||| || || |||||| | |||||| | || | | ||||| || Sbjct 4389 CAGAGGCTCATCTTCGCAGGGAAACAACTAGAAGATGGTCGTACCCTCTCAGATTACAAT 4330 Query 28734 ATTCAAAAAG 28743 || ||||||| Sbjct 4329 ATCCAAAAAG 4320 >seq741633 Length=11487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || | || || || || ||||| || |||| |||| Sbjct 10236 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACTCTGGAGGTGGAAGCTTCT 10295 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||| ||| ||||| || || | || ||||||| Sbjct 10296 GACACCATTGAGAATGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 10355 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| |||| |||||||| || ||||| ||||||||| | || | | ||||| ||| Sbjct 10356 CAGCGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGAAGGACCTTATCAGATTACAAC 10415 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| |||||||||||||| |||| | || || |||| || || Sbjct 10416 ATCCAAAAGGAATCTACTCTGCATTTGGTTCTGAGGCTAAGAGGTGGAAT 10465 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| ||||||||||| ||||| || || ||||| |||||| ||| || | || Sbjct 8526 GATCAGCAGAGACTTATATTTGCAGGAAAGCAATTAGAAGATGGCCGTACTTTGTCAGAC 8585 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||||||||||| ||| | || | ||| | |||||||||| Sbjct 8586 TATAACATTCAAAAGGAATCTACTCTTCACCTTGTGCTCAGACTTAGAGGAGGGAT 8641 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || | || || |||||||||||| ||| ||| | || Sbjct 10920 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAAACCATTACCTTGGAAGTGGAGGCGTCG 10979 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| |||||||| || | || |||||| Sbjct 10980 GACACCATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGGATTCCTCCAGATCAG 11039 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || |||||||| ||||| || | |||||| || || | ||||| ||| Sbjct 11040 CAACGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCAGATTACAAC 11099 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || |||||||||||||| |||| |||| || || || || || Sbjct 11100 ATTCAGAAGGAATCTACTCTGCATCTGGTGCTAAGGTTGCGCGGTGGCAT 11149 >seq1341392 Length=603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||||||||| || | || || || ||||| || ||| ||| | ||| Sbjct 281 ATGCAGATATTTGTAAAGACCCTCACAGGCAAGACCATAACATTGGAAGTTGAAGCCTCA 340 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || || || || || | || ||||||| Sbjct 341 GACACTATAGAAAATGTCAAGGCGAAGATTCAGGATAAGGAAGGCATTCCACCAGATCAA 400 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || ||||| || || || ||| | |||||| | || || | ||||| ||| Sbjct 401 CAGAGGCTGATCTTCGCAGGGAAGCAACTCGAAGATGGTCGTACACTGTCTGATTACAAC 460 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || |||||||| || || ||||| ||||||| |||| || || Sbjct 461 ATTCAGAAGGAATCTACCCTCCATTTGGTACTAAGATTGAGAGGTGGTAT 510 >seq31008 Length=30129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| ||||| || ||||||||| ||| || | ||| Sbjct 5596 GATCAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAACATTGTCTGAT 5537 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| || || |||||||||||| ||||| | || |||||| | || || || Sbjct 5536 TATAATATCCAGAAAGAATCTACTTTGCACCTTGTGTTAAGACTCCGTGGTGG 5484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418159333629468