Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq32887 109 2e-18 seq116962 89.7 1e-12 seq286372 87.8 5e-12 seq1081620 84.2 6e-11 >seq32887 Length=3497 Score = 109 bits (120), Expect = 2e-18 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 ||||| |||||||| || || ||||||| | | | | | | |||| ||||| ||| Sbjct 705 GCTCCTTGACCAACAAGAATCTCGTCAAATTCTGGACCAGCTGCATGAAAGAATGGTACT 646 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 ||||| |||||||| || | ||||||||||| || ||||| || |||||||| | Sbjct 645 CCAGCTTCACCTGCTACAGCACGTGCCAGAAGTGTTTTTCCTGTGCCTGGTGGTCCAACG 586 Query 289231 AATAGAACTCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTT 289287 | ||||||||| || || | ||| | || ||| || | | || || ||| |||| Sbjct 585 AGTAGAACTCCTTTAGGAAGTTTCCCACCCAAAGCTGA---AAACTTTTCTGGGTTCTTC 529 Query 289288 AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 || ||||| |||| || | ||||| | |||||| |||||| Sbjct 528 AAGAATTCGACAACATCTTTTAGTTCTTGTTTTGCTTCATCA 487 >seq116962 Length=305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 303988 TTCTTGGCGATTTTCAGCGGAACGCCTAACTCGCTAATGGATAAGTTGGGGTCAGGTGTA 304047 ||| |||| || |||||||||||||| || ||| ||| || || ||||| || ||| Sbjct 45 TTCATGGCAATCTTCAGCGGAACGCCCAATTCGTCAATCATCAAATTCGGGTCCGGCGTA 104 Query 304048 ATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGATTACCCCTAACACGACCG 304107 || || || ||||| || ||||| || ||||| ||||| | ||| || | || || || Sbjct 105 ATCACCGAACGAGCGCTGAAATCCACTCGCTTCCCCATCAAATTTCCTCGCACTCGCCCC 164 Query 304108 CCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCGACC 304151 |||| || || | | | | ||| |||||||| || ||||| Sbjct 165 TCCTTCCCCTTAATTCGCTGTTGGATAGCCTTCAGCGGCCGACC 208 >seq286372 Length=1607 Score = 87.8 bits (96), Expect = 5e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 |||| || ||| ||||||| | ||||||||| |||| ||| |||||| | |||||| Sbjct 871 CCAACTCCCACAAACATTTCAAGGAATTCAGAACCGGAAACTGTAATGAAAGGCACATTT 812 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 ||||| ||||| |||| | ||||| ||||| || || |||||||| || || Sbjct 811 GCTTCACCTGCAGTTGCCTTTGCCAGTAGTGTTTTTCCAGTTCCAGGGGGACC 759 >seq1081620 Length=7940 Score = 84.2 bits (92), Expect = 6e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 302602 ATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATA 302661 |||| ||| ||| || ||||| ||||| |||||||| ||||| | ||||||||||| Sbjct 3711 ATATTACCTGTTTCAGCAGTTTTCACAGCAGTATCAATCAGACCTTCTCGACCACCCATG 3770 Query 302662 GCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCA 302721 || || ||||| | ||| ||| || || | | | | ||| | || |||||||| Sbjct 3771 GCGTGAAAGAAAAATTCTGAAGGTGTGAGACCGGCTAGATACGAGTTTTCGACGAAACCT 3830 Query 302722 CGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCG 302781 | | ||||| || ||| || |||| ||||| | || | || | | || Sbjct 3831 CTGGATTCGGGACCATAGTCATCTTTAATAAAATGTGGTAATGTTCGTTTACGAAAACCA 3890 Query 302782 TATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || || |||||||| |||||||| || ||||||| || | ||| | |||| Sbjct 3891 AAGGGTATTCGCTTTCCTTCAACGTTTTGTTGTCCCACACAAGCAATAACCTGC 3944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1445464166818804