Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq923880 116 3e-21 seq708045 116 3e-21 seq31008 95.1 1e-14 seq741633 86.0 5e-12 seq1341392 84.2 2e-11 seq302910 82.4 6e-11 >seq923880 Length=23140 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || |||||||||| || || || | ||| | ||| || || ||||| ||||||||||| Sbjct 2427 GCAGGACGTCCAATGGCTTTTGCAACTTCTGCCATATTTACTATGACTGTCTTGATGCCA 2486 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 |||||||| |||||||| ||||| || || ||||| |||||||| |||||||| || Sbjct 2487 TTGCCCTTGCCTTCGACTTTGGCCATAATCCGGGGCATCTTGTAGCGATAGAACGCATCG 2546 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||| || | ||| ||||| ||| | ||||| Sbjct 2547 CTCACGTTCCTGTTTACGTTGACACTTCCCAT 2578 >seq708045 Length=25632 Score = 116 bits (128), Expect = 3e-21 Identities = 173/244 (71%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 110257 TTATAAGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGT 110316 |||||||| || |||||||| |||||||| || ||||| || || || || || ||| | Sbjct 10376 TTATAAGAAATC-AAAATGCAGATATTTGTGAAGACTTTGACGGGGAAGACTATCACCTT 10434 Query 110317 CGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGG 110376 || || || ||||| | | | || ||| || || || |||||||| Sbjct 10435 AGAGGTAGAAGCTTCGGATACAATTGAAAATGTTAAAGCCAAAATCCAGGATAAAGAAGG 10494 Query 110377 CGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAAC 110436 | ||| |||||| || ||||| || | ||| || || ||| |||| |||| | |||| Sbjct 10495 AATTCCCCCGGATCAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAAC 10554 Query 110437 AATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGG 110496 | || | ||||| || || || ||||||||||| || ||| | ||||||||||| || || Sbjct 10555 ATTGTCTGATTATAATATCCAGAAAGAATCTACTTTACACCTTGTGTTAAGACTCCGTGG 10614 Query 110497 GGGA 110500 ||| Sbjct 10615 TGGA 10618 >seq31008 Length=30129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 |||||| || ||||| || | ||| || || ||| |||| |||| | ||||| || | || Sbjct 5597 GGATCAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAACATTGTCTGA 5538 Query 110446 TTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||| || || || ||||||||||| |||||| | ||||||||||| || || ||| Sbjct 5537 TTATAATATCCAGAAAGAATCTACTTTGCACCTTGTGTTAAGACTCCGTGGTGGA 5483 >seq741633 Length=11487 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | || |||||||| || || ||||| |||| | Sbjct 8868 ATGCAGATCTTTGTAAAGACTCTGACTGGCAAAACTATAACACTCGAAGTGGAGGCATCA 8927 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| ||||| ||||| | || || ||| Sbjct 8928 GACACCATAGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATACCACCAGACCAA 8987 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| || |||||||| || |||| | | || || | ||||||||| Sbjct 8988 CAGAGATTGATTTTTGCAGGAAAACAGCTTGAAGATGGCCGCACTTTGTCAGATTACAAC 9047 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 ||||| ||||| ||||| | ||| |||| | || || |||||| Sbjct 9048 ATTCAGAAAGAGTCTACACTTCACCTGGTTCTTAGGCT--GAGGGG 9091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| || |||||| | || || || Sbjct 9552 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACAATTACCCTGGAGGTAGAAGCTTCA 9611 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || ||||| ||||| |||||| | || || || Sbjct 9612 GACACTATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 9671 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| || ||||| |||| |||| || ||||||||||| Sbjct 9672 CAGCGTCTCATCTTTGCTGGTAAGCAACTGGAAGATGGACGAACCCTGTCGGATTACAAC 9731 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| ||||| ||||| | || ||||| || || Sbjct 9732 ATTCAGAAGGAATCTACTTTGCATCTGGTGCTGAGGCTGCGTGGTGG 9778 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || || |||||||||||| | ||| |||| | Sbjct 10920 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAAACCATTACCTTGGAAGTGGAGGCGTCG 10979 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || |||||| ||||||||||| | || ||||| Sbjct 10980 GACACCATTGAGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGGATTCCTCCAGATCAG 11039 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || || ||||| || |||| | || || | ||||||||| Sbjct 11040 CAACGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCAGATTACAAC 11099 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| |||| ||||| |||| |||| || || Sbjct 11100 ATTCAGAAGGAATCTACTCTGCATCTGGTGCTAAGGTTGCGCGGTGG 11146 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | || ||||| || ||||| | || ||| || Sbjct 10236 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACTCTGGAGGTGGAAGCTTCT 10295 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| ||||| ||||| |||||| | || |||||| Sbjct 10296 GACACCATTGAGAATGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 10355 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| || | ||| || |||||| |||| |||| || || | | ||||||||| Sbjct 10356 CAGCGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGAAGGACCTTATCAGATTACAAC 10415 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||| |||||||| |||| |||| | || || |||| |||| Sbjct 10416 ATCCAAAAGGAATCTACTCTGCATTTGGTTCTGAGGCTAAGAGGTGGAA 10464 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || | || |||||||| ||||| | ||| ||| | Sbjct 10463 AATGCAAATTTTTGTGAAGACACTTACTGGCAAAACAATTACATTGGAAGTTGAGGCATC 10522 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| |||||| || ||||||||| | || || || Sbjct 10523 TGACACAATTGAAAATGTGAAAGCTAAGATTCAAGATAAAGAAGGCATCCCTCCAGACCA 10582 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || || | ||| || || ||||| || |||| || || | | |||||||| Sbjct 10583 ACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGGACCTTATCTGATTACAA 10642 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || ||||| | ||| | || ||||| || || Sbjct 10643 CATTCAGAAGGAATCCACTTTGCATTTAGTGCTGAGGCTGCGTGGAGG 10690 >seq1341392 Length=603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTGA 110331 ||||| |||||||| || || | || ||||| ||||| || | ||| || |||| | Sbjct 281 ATGCAGATATTTGTAAAGACCCTCACAGGCAAGACCATAACATTGGAAGTTGAAGCCTCA 340 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || || ||||||| || || |||||| | || ||||| Sbjct 341 -GACACTATAGAAAATGTCAAGGCGAAGATTCAGGATAAGGAAGGCATTCCACCAGATCA 399 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || || | || || || || || || |||| | ||| || | |||||||| Sbjct 400 ACAGAGGCTGATCTTCGCAGGGAAGCAACTCGAAGATGGTCGTACACTGTCTGATTACAA 459 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || |||||||| | || |||| ||||| || |||| || Sbjct 460 CATTCAGAAGGAATCTACCCTCCATTTGGTACTAAGATTGAGAGGTGG 507 >seq302910 Length=12142 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | || || ||||| || || | ||| ||||| Sbjct 11339 ATGCAGATTTTTGTAAAAACTCTGACAGGGAAAACAATAACATTGGAAGTTGAGCCATCA 11280 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || ||| ||||||||||| | || |||||| Sbjct 11279 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATACCGCCAGATCAA 11220 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| |||||||| || ||||||| ||||| | | ||||||||| Sbjct 11219 CAGCGATTAATCTTTGCTGGTAAACAACTTGAGGATGGAAGAACTCTCTCAGATTACAAC 11160 Query 110453 ATTCAAAAAG 110462 || ||||||| Sbjct 11159 ATACAAAAAG 11150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405810109219556