Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq708045 95.1 9e-15 seq741633 89.7 4e-13 seq831174 86.0 5e-12 >seq708045 Length=25632 Score = 95.1 bits (104), Expect = 9e-15 Identities = 173/252 (69%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 107540 TTATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGT 107599 |||||||| | |||||||| || ||||| || ||||| || || || || || ||| | Sbjct 10376 TTATAAGAAATC-AAAATGCAGATATTTGTGAAGACTTTGACGGGGAAGACTATCACCTT 10434 Query 107600 CGAAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG 107659 || || ||| ||||| | | | || ||| || || ||||||||||| Sbjct 10435 AGAGGTAGAAGCTTCGGATACAATTGAAAATGTTAAAGCCAAAATCCAGGATAAAGAAGG 10494 Query 107660 CGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAAC 107719 | ||| ||||||||||||||| || | ||| || || ||| |||| || | | ||| Sbjct 10495 AATTCCCCCGGATCAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAAC 10554 Query 107720 AATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG 107779 | || | || || || || || || || ||||| || ||| | ||||| ||| | || || Sbjct 10555 ATTGTCTGATTATAATATCCAGAAAGAATCTACTTTACACCTTGTGTTAAGACTCCGTGG 10614 Query 107780 GGGAAATAATAA 107791 ||| ||| || Sbjct 10615 TGGAGCTAAGAA 10626 >seq741633 Length=11487 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || |||| || |||||||| || | ||| ||||| Sbjct 8127 ATGCAGATATTCGTTAAGACACTAACTGGTAAAACCATCACATTGGAAGTAGAGGCATCT 8186 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||| ||||| ||||| | || |||||| Sbjct 8187 GATACAATTGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGGATCCCACCTGATCAG 8246 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| |||| ||| || ||||| || || || | | ||| | | || ||||| Sbjct 8247 CAGAGACTGATTTTTGCTGGCAAACAACTCGAAGATGGGAGAACTCTATCTGATTACAAT 8306 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||| ||||| ||||| |||| ||||| ||||| || || Sbjct 8307 ATTCAGAAGGAATCTACCCTGCACCTGGTATTGAGGTTGCGTGGTGG 8353 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || ||||| || |||||| | || || ||| Sbjct 9552 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACAATTACCCTGGAGGTAGAAGCTTCA 9611 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| || || |||||| | || || ||| Sbjct 9612 GACACTATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 9671 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| || ||||| || | ||| || |||| |||||| Sbjct 9672 CAGCGTCTCATCTTTGCTGGTAAGCAACTGGAAGATGGACGAACCCTGTCGGATTACAAC 9731 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||| ||||| ||||| ||||| |||| |||| || || Sbjct 9732 ATTCAGAAGGAATCTACTTTGCATCTGGTGCTGAGGCTGCGTGGTGG 9778 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| || || || ||||| ||||| | ||| || || | Sbjct 10008 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATTACATTAGAAGTAGAAGCATCC 10067 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | |||||| ||||| |||||||||||| | || || ||| Sbjct 10068 GATACCATAGAGAATGTAAAAGCGAAGATCCAGGATAAAGAAGGCATTCCGCCAGACCAG 10127 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || || |||||||| || | || || | || || || Sbjct 10128 CAGAGATTGATCTTTGCAGGAAAGCAGCTGGAAGATGGGCGGACCTTGTCTGATTATAAT 10187 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||| ||||| |||| | || |||| ||||| || || Sbjct 10188 ATTCAGAAGGAATCTACTCTGCATCTTGTCCTGAGGTTGCGTGGTGG 10234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||||||||| || || | || |||||||| ||||| | || Sbjct 10453 TAAGAGGTGGAA--TGCAAATTTTTGTGAAGACACTTACTGGCAAAACAATTACATTGGA 10510 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 | ||||| || || | | | || ||| |||||| |||||||||||| | Sbjct 10511 AGTTGAGGCATCTGACACAATTGAAAATGTGAAAGCTAAGATTCAAGATAAAGAAGGCAT 10570 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 || || || ||| | || || | ||| || || ||||| || || | | || | Sbjct 10571 CCCTCCAGACCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGGACCTT 10630 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 | || ||||||||||| ||||| || || ||||| | ||| |||| |||| || || Sbjct 10631 ATCTGATTACAACATTCAGAAGGAATCCACTTTGCATTTAGTGCTGAGGCTGCGTGGAGG 10690 >seq831174 Length=18794 Score = 86.0 bits (94), Expect = 5e-12 Identities = 171/252 (68%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 107540 TTATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGT 107599 |||||||| | |||||||| || ||||| || | ||| || || || || || ||| | Sbjct 4096 TTATAAGAAATC-AAAATGCAGATATTTGTGAAGAATTTGACGGGGAAGACTATCACCTT 4154 Query 107600 CGAAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG 107659 || || ||| ||||| | | | || || || || ||||||||||| Sbjct 4155 AGAGGTAGAAGCTTCGGATACAATTGAAAATGTTAATGCCAAAATCCAGGATAAAGAAGG 4214 Query 107660 CGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAAC 107719 | ||| ||||||||||||||| || | ||| || || ||| |||| || | | ||| Sbjct 4215 AATTCCCACGGATCAGCAGAGACTGATATTTGCTGGCAAGCAGTTGGAAGATGGCCGAAC 4274 Query 107720 AATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG 107779 | || | || || || || || || | ||||| || ||| | ||||||||| | || || Sbjct 4275 ATTGTCTGATTATAATATCCAGAAATAATCTACTTTACACCTTGTGTTGAGACTCCGTGG 4334 Query 107780 GGGAAATAATAA 107791 ||| ||| || Sbjct 4335 TGGAGCTAAGAA 4346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392083156767988