Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq781304 96.9 6e-15 seq741633 86.0 1e-11 >seq781304 Length=12594 Score = 96.9 bits (106), Expect = 6e-15 Identities = 280/425 (66%), Gaps = 7/425 (2%) Strand=Plus/Plus Query 182864 GAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTTCAGTCTACTC 182923 |||| || || |||||||||||| || ||| || | || || | |||| || | Sbjct 7750 GAGAGCTGTCAGATAATTTTTGTGTTTACAATGAAAAATATGACATTGTTGAGAGACCAA 7809 Query 182924 ACGCATGGGC-TAGAAGAACATTAGAAGATCACGTTAATGATCCTAGAAA--GTATATCT 182980 | || ||||| | |||| ||| | | |||||| || || | ||| | || |||| Sbjct 7810 ATGCTTGGGCATTGAAG-ACACTTAATGATCACAGAAA--ATACAAGAGATCATACATCT 7866 Query 182981 ATTCTATTAAACAA-CTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAA 183039 | || | || || | | |||| | ||||| |||| | |||||||| | | ||| Sbjct 7867 ACACTCGTGAAGAATTTGGGAAAGTCTTTAACACTTGACGATTTATGGAATTCTGCCCAA 7926 Query 183040 ATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAG 183099 || ||| | ||| ||| || ||||| ||| | || | | ||||| ||| | || | | Sbjct 7927 ATTCAGTTAGTGAAAGATGGCAAAATACATGGATTCATGCATATGTATTGGACAAAGATG 7986 Query 183100 ATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAAT 183159 ||| | |||||| | | | | || ||||| | ||| ||| | || ||| | || || Sbjct 7987 ATATTAGAATGGTCTACATCACCAGAAGAAGGTTTAAGTACTGCAATTTATTTTAATGAT 8046 Query 183160 AAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGC 183219 | || | | || | | | |||||| |||| || | ||| |||||| | | || Sbjct 8047 AGATATTCATTGGAAGAAGCAGGTCCTAATGGATTTGTTGTATGTTTGTGGTTTGTATGT 8106 Query 183220 GGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAAT 183279 ||| ||||| | || ||| |||||||| |||||||||| ||| | || ||| || Sbjct 8107 GGAAAACACGTTCAAGGATGGCTGGAAAGACCAGTATTTGGAAAAATACGGTACATGTAT 8166 Query 183280 TATGA 183284 ||||| Sbjct 8167 TATGA 8171 >seq741633 Length=11487 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/144 (72%), Gaps = 11/144 (8%) Strand=Plus/Minus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| ||||||| ||||||| || || || ||||| |||| || || | ||||| || Sbjct 10442 CAAATGCAGAGTAGATTCCTTTTGGATGTTGTAATCTGATAAGGTCCTTCCATCTTCCAA 10383 Query 81697 C-----------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 | |||||| |||| |||||| ||||| | || ||||||| ||||| || Sbjct 10382 CTGTTTTCCTGCAAAGATGAGTCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGAT 10323 Query 81746 CTTTGCTTTTATATTTTCAATCGT 81769 ||||||||| | ||| ||||| || Sbjct 10322 CTTTGCTTTGACATTCTCAATGGT 10299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 887629825941120