Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq705761 116 5e-21 seq782681 109 8e-19 seq259166 93.3 6e-14 seq1023143 89.7 7e-13 seq577127 87.8 2e-12 >seq705761 Length=1511 Score = 116 bits (128), Expect = 5e-21 Identities = 264/387 (68%), Gaps = 15/387 (4%) Strand=Plus/Minus Query 27418 GACCAAGCGTATTTTTA-GGTTGTATAAAGTCTAACCG-GAAGGCTATAGAG-AAGAAGA 27474 || ||||| |||||||| |||||| |||| ||| | |||| | | || ||||||| Sbjct 1088 GATCAAGCATATTTTTATGGTTGTTTAAAACGTAAAAGAGAAG--TTTTGATTAAGAAGA 1031 Query 27475 AGATTCCAAGTGATAGCTT-CTTCTATGCTAAGAAGATTAGTGGTAAATGGTTAGAGAGC 27533 | ||| ||| || || || ||| |||||||||| | || | ||| ||| || Sbjct 1030 ATATTTCAACAGA-AGATTACTTTTATGCTAAGATAACTAAAGAGGGGTGGAAAGAAAGT 972 Query 27534 CATGAGGGCTATAAGAATGCAAAAATTCTCATCAAGTCCGAGTGGGTCGAGTCGAACGTT 27593 ||| | ||| || |||||||| || || | || |||| | |||| || || Sbjct 971 AATGCAAGTTATTGCTGAGCTAAAATTCTTATAAAATTAGACTGGGCCAAGTCAAATATT 912 Query 27594 GATAAATTTGTTAAGAACCTAGGAGTCGAAG--TCAG-----TCCAAGCAAATTGAGAGA 27646 |||||| || | || || ||| |||| | || | ||| | || || || Sbjct 911 ACAAAATTTATTGATAAA-TACGAGAAGAAGAGTAAGAATAATACAACAATTTTAAGGGA 853 Query 27647 AGCCCCGCCTATTCTAGACTTGGAAGAACATGAGAAATTTAGAGACGACACAGGAAATAT 27706 ||| || | |||| |||| |||||||| || ||||| ||| | || ||| |||| || | Sbjct 852 AGCTCCACTTATTTTAGAGTTGGAAGATCACGAGAAGTTTCGTGATGACGCAGGTAACTT 793 Query 27707 CCACGAAGTAGAAGTGAGAGGAGTCAGAGATGAGGATAAAATTTTCTTCAAAGCCTCAGA 27766 ||||| |||||||||||||||||||| ||||||||||| | || || || | | Sbjct 792 ATTTGAAGTTGAAGTGAGAGGAGTCAGAGAAGAGGATAAAATATATTTTAAGGCTACTCA 733 Query 27767 TATAGAACGCTTGTTTGAGATGGAGAA 27793 ||| ||| |||||||| ||||| || Sbjct 732 TATTGAAAAATTGTTTGAAATGGAAAA 706 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 27905 AGAACATCGTGTCAAAACTACATTTTTGACATATAATGGTCTCATCAAGGTTATATATAG 27964 |||| | || || |||| |||||||| || ||||||||||| | || ||||| ||||| Sbjct 594 AGAAAAACGGGTAAAAAGAACATTTTTTACTTATAATGGTCTACTTAAAGTTATTTATAG 535 Query 27965 ATCTAATTCCGGTACAGCACATAAGTTCCGTAAGTGGGCCACAGGGGTTATATACACAGC 28024 ||| || || | |||||| || ||||||||||| || || ||||| ||||| Sbjct 534 TTCTCGTTGTGGAATTGCACATCGTTTTCGTAAGTGGGCTACTAAAGTGATATATACAGC 475 Query 28025 ACATTTAGGTACAGAAGAGCAGAGAGATGAATTGGCCCTAGAGCTGACTGGAATCAACCA 28084 ||| | ||||| ||||| || ||| | || || |||| | ||||| | ||| Sbjct 474 TCATCTCGGTACTGAAGAACAAAGATTTTAACAAGCTTTAGATATCGCTGGAGTAAACGC 415 Query 28085 TAATATTGTAAGACAAACCTTT 28106 | | |||||| |||| |||| Sbjct 414 AACTCTTGTAAAACAAGTCTTT 393 >seq782681 Length=17127 Score = 109 bits (120), Expect = 8e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 27651 CCGCCTATTCTAGACTTGGAAGAACATGAGAAATTTAGAGACGACACAGGAAATATCCAC 27710 || |||||| |||| |||||||||| |||||| ||| | || |||||||| ||||| Sbjct 1773 CCACCTATTTTAGAGTTGGAAGAACGTGAGAAGTTTTGTGATGACACAGGTAATATGTTT 1714 Query 27711 GAAGTAGAAGTGAGAGGAGTCAGAGATGAGGATAAAAT-TTTCTTCAAAGCCTCAGATAT 27769 ||||| ||||| |||||||||||||| | ||||||| | | ||||| | |||||| Sbjct 1713 GAAGTTGAAGTAAGAGGAGTCAGAGAAGTTAATAAAATATATTTTCAATG-TAGAGATAT 1655 Query 27770 AGAACGCTTGTTTGAGATGGAGAACCT 27796 ||| |||||||| ||||| ||||| Sbjct 1654 TGAAAAATTGTTTGAAATGGAAAACCT 1628 >seq259166 Length=12937 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 27552 GCAAAAATTCTCATCAAGTCCGAGTGGGTCGAGTCGAACGTTGATAAATTTGTTAAGAAC 27611 || ||||| || || || | || |||| | ||||||| ||| |||| || || | || Sbjct 11556 GCTAAAATACTTATAAAACCAGACTGGGCCAAGTCGAATGTTACTAAAGTTATTGATAAA 11497 Query 27612 CTAGGAGTCGAAG--TCAGTCCAAGCAAA-----TTGAGAGAAGCCCCGCCTATTCTAGA 27664 | | ||| |||| | ||| | || || || ||| | || |||||| | || Sbjct 11496 C-ACGAGAAGAAGAGTAAGTAGTATACAACACTTTTAAGGGAATCTCCACCTATTTTGGA 11438 Query 27665 CTTGGAAGAACATGAGAAATTTAGAGACGACACAGGAAATATCCACGAAGTAGAAGTGAG 27724 ||||||||||| ||||| || | || ||| |||| || | ||||| ||||| || Sbjct 11437 GTTGGAAGAACACGAGAAGATTTGTGATGACGCAGGTAACTTGTTTGAAGTTGAAGTAAG 11378 Query 27725 AGGAGTCAGAGATGAGGATAAAATTTTCTTCAAAGCCTCAGATATAGAACGCTTGTTTGA 27784 |||||||||||| ||| ||||||| | ||| ||||| ||||| ||| || ||| | Sbjct 11377 AGGAGTCAGAGAAGAGAATAAAATATACTTTAAAGCTATCGATATCGAAAAATTATTTCA 11318 Query 27785 GATGGAGAACCTGGT 27799 ||| | || || || Sbjct 11317 AATGAACAATCTAGT 11303 >seq1023143 Length=2676 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27912 CGTGTCAAAACTACATTTTTGACATATAATGGTCTCATCAAGGTTATATATAGATCTAAT 27971 || || |||| |||||||| || ||||||||||| | |||||||| || || ||| | Sbjct 916 CGGGTAAAAAGAACATTTTTTACTTATAATGGTCTTTTGAAGGTTATTTACAGTTCTCCT 975 Query 27972 TCCGGTACAGCACATAAGTTCCGTAAGTGGGCCACAGGGGTTATATACACAGCACATTTA 28031 | || | ||| ||| |||||||||||||| || || |||| ||||| ||| | Sbjct 976 TGTGGAATAGCTCATCGTTTCCGTAAGTGGGCTACTAAAGTAGTATATACAGCTCATCTT 1035 Query 28032 GGTACAGAAGAGCA 28045 ||||| |||||||| Sbjct 1036 GGTACGGAAGAGCA 1049 >seq577127 Length=16340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 27889 CCCTTTCTGGGTTATCAGAACAT---CGTGTCAAAACTACATTTTTGACATATAATGGTC 27945 |||||| ||||| | |||||| || |||||| |||||||| || |||||||||| Sbjct 7111 CCCTTT-TGGGTCAGAAGAACAAAAACGAGTCAAACGAACATTTTTTACTTATAATGGTC 7169 Query 27946 TCATCAAGGTTATATATAGATCTAATTCCGGTACAGCACATAAGTTCCGTAAGTGGGCCA 28005 | | |||||||| | || ||| ||||| ||||||| | || || ||| | ||||| | Sbjct 7170 TTTTAAAGGTTATTTTTAAATCCAATTCAGGTACAGGATATCGATTTCGTGATTGGGCTA 7229 Query 28006 CAGGGGTTATATACACAGCACATTTAGGTACAGAAGAGCAGAGA 28049 | || |||| ||||| ||| | ||||| || || || ||| Sbjct 7230 CTAAAGTAGTATATACAGCTCATCTCGGTACTGATGAACAAAGA 7273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692274296658240