Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18]
1,397,492 sequences; 5,759,798,599 total letters
Query= NC_024451.1
Length=220222
Score E
Sequences producing significant alignments: (Bits) Value
seq705761 116 5e-21
seq782681 109 8e-19
seq259166 93.3 6e-14
seq1023143 89.7 7e-13
seq577127 87.8 2e-12
>seq705761
Length=1511
Score = 116 bits (128), Expect = 5e-21
Identities = 264/387 (68%), Gaps = 15/387 (4%)
Strand=Plus/Minus
Query 27418 GACCAAGCGTATTTTTA-GGTTGTATAAAGTCTAACCG-GAAGGCTATAGAG-AAGAAGA 27474
|| ||||| |||||||| |||||| |||| ||| | |||| | | || |||||||
Sbjct 1088 GATCAAGCATATTTTTATGGTTGTTTAAAACGTAAAAGAGAAG--TTTTGATTAAGAAGA 1031
Query 27475 AGATTCCAAGTGATAGCTT-CTTCTATGCTAAGAAGATTAGTGGTAAATGGTTAGAGAGC 27533
| ||| ||| || || || ||| |||||||||| | || | ||| ||| ||
Sbjct 1030 ATATTTCAACAGA-AGATTACTTTTATGCTAAGATAACTAAAGAGGGGTGGAAAGAAAGT 972
Query 27534 CATGAGGGCTATAAGAATGCAAAAATTCTCATCAAGTCCGAGTGGGTCGAGTCGAACGTT 27593
||| | ||| || |||||||| || || | || |||| | |||| || ||
Sbjct 971 AATGCAAGTTATTGCTGAGCTAAAATTCTTATAAAATTAGACTGGGCCAAGTCAAATATT 912
Query 27594 GATAAATTTGTTAAGAACCTAGGAGTCGAAG--TCAG-----TCCAAGCAAATTGAGAGA 27646
|||||| || | || || ||| |||| | || | ||| | || || ||
Sbjct 911 ACAAAATTTATTGATAAA-TACGAGAAGAAGAGTAAGAATAATACAACAATTTTAAGGGA 853
Query 27647 AGCCCCGCCTATTCTAGACTTGGAAGAACATGAGAAATTTAGAGACGACACAGGAAATAT 27706
||| || | |||| |||| |||||||| || ||||| ||| | || ||| |||| || |
Sbjct 852 AGCTCCACTTATTTTAGAGTTGGAAGATCACGAGAAGTTTCGTGATGACGCAGGTAACTT 793
Query 27707 CCACGAAGTAGAAGTGAGAGGAGTCAGAGATGAGGATAAAATTTTCTTCAAAGCCTCAGA 27766
||||| |||||||||||||||||||| ||||||||||| | || || || | |
Sbjct 792 ATTTGAAGTTGAAGTGAGAGGAGTCAGAGAAGAGGATAAAATATATTTTAAGGCTACTCA 733
Query 27767 TATAGAACGCTTGTTTGAGATGGAGAA 27793
||| ||| |||||||| ||||| ||
Sbjct 732 TATTGAAAAATTGTTTGAAATGGAAAA 706
Score = 95.1 bits (104), Expect = 2e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 27905 AGAACATCGTGTCAAAACTACATTTTTGACATATAATGGTCTCATCAAGGTTATATATAG 27964
|||| | || || |||| |||||||| || ||||||||||| | || ||||| |||||
Sbjct 594 AGAAAAACGGGTAAAAAGAACATTTTTTACTTATAATGGTCTACTTAAAGTTATTTATAG 535
Query 27965 ATCTAATTCCGGTACAGCACATAAGTTCCGTAAGTGGGCCACAGGGGTTATATACACAGC 28024
||| || || | |||||| || ||||||||||| || || ||||| |||||
Sbjct 534 TTCTCGTTGTGGAATTGCACATCGTTTTCGTAAGTGGGCTACTAAAGTGATATATACAGC 475
Query 28025 ACATTTAGGTACAGAAGAGCAGAGAGATGAATTGGCCCTAGAGCTGACTGGAATCAACCA 28084
||| | ||||| ||||| || ||| | || || |||| | ||||| | |||
Sbjct 474 TCATCTCGGTACTGAAGAACAAAGATTTTAACAAGCTTTAGATATCGCTGGAGTAAACGC 415
Query 28085 TAATATTGTAAGACAAACCTTT 28106
| | |||||| |||| ||||
Sbjct 414 AACTCTTGTAAAACAAGTCTTT 393
>seq782681
Length=17127
Score = 109 bits (120), Expect = 8e-19
Identities = 114/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 27651 CCGCCTATTCTAGACTTGGAAGAACATGAGAAATTTAGAGACGACACAGGAAATATCCAC 27710
|| |||||| |||| |||||||||| |||||| ||| | || |||||||| |||||
Sbjct 1773 CCACCTATTTTAGAGTTGGAAGAACGTGAGAAGTTTTGTGATGACACAGGTAATATGTTT 1714
Query 27711 GAAGTAGAAGTGAGAGGAGTCAGAGATGAGGATAAAAT-TTTCTTCAAAGCCTCAGATAT 27769
||||| ||||| |||||||||||||| | ||||||| | | ||||| | ||||||
Sbjct 1713 GAAGTTGAAGTAAGAGGAGTCAGAGAAGTTAATAAAATATATTTTCAATG-TAGAGATAT 1655
Query 27770 AGAACGCTTGTTTGAGATGGAGAACCT 27796
||| |||||||| ||||| |||||
Sbjct 1654 TGAAAAATTGTTTGAAATGGAAAACCT 1628
>seq259166
Length=12937
Score = 93.3 bits (102), Expect = 6e-14
Identities = 175/255 (69%), Gaps = 8/255 (3%)
Strand=Plus/Minus
Query 27552 GCAAAAATTCTCATCAAGTCCGAGTGGGTCGAGTCGAACGTTGATAAATTTGTTAAGAAC 27611
|| ||||| || || || | || |||| | ||||||| ||| |||| || || | ||
Sbjct 11556 GCTAAAATACTTATAAAACCAGACTGGGCCAAGTCGAATGTTACTAAAGTTATTGATAAA 11497
Query 27612 CTAGGAGTCGAAG--TCAGTCCAAGCAAA-----TTGAGAGAAGCCCCGCCTATTCTAGA 27664
| | ||| |||| | ||| | || || || ||| | || |||||| | ||
Sbjct 11496 C-ACGAGAAGAAGAGTAAGTAGTATACAACACTTTTAAGGGAATCTCCACCTATTTTGGA 11438
Query 27665 CTTGGAAGAACATGAGAAATTTAGAGACGACACAGGAAATATCCACGAAGTAGAAGTGAG 27724
||||||||||| ||||| || | || ||| |||| || | ||||| ||||| ||
Sbjct 11437 GTTGGAAGAACACGAGAAGATTTGTGATGACGCAGGTAACTTGTTTGAAGTTGAAGTAAG 11378
Query 27725 AGGAGTCAGAGATGAGGATAAAATTTTCTTCAAAGCCTCAGATATAGAACGCTTGTTTGA 27784
|||||||||||| ||| ||||||| | ||| ||||| ||||| ||| || ||| |
Sbjct 11377 AGGAGTCAGAGAAGAGAATAAAATATACTTTAAAGCTATCGATATCGAAAAATTATTTCA 11318
Query 27785 GATGGAGAACCTGGT 27799
||| | || || ||
Sbjct 11317 AATGAACAATCTAGT 11303
>seq1023143
Length=2676
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27912 CGTGTCAAAACTACATTTTTGACATATAATGGTCTCATCAAGGTTATATATAGATCTAAT 27971
|| || |||| |||||||| || ||||||||||| | |||||||| || || ||| |
Sbjct 916 CGGGTAAAAAGAACATTTTTTACTTATAATGGTCTTTTGAAGGTTATTTACAGTTCTCCT 975
Query 27972 TCCGGTACAGCACATAAGTTCCGTAAGTGGGCCACAGGGGTTATATACACAGCACATTTA 28031
| || | ||| ||| |||||||||||||| || || |||| ||||| ||| |
Sbjct 976 TGTGGAATAGCTCATCGTTTCCGTAAGTGGGCTACTAAAGTAGTATATACAGCTCATCTT 1035
Query 28032 GGTACAGAAGAGCA 28045
||||| ||||||||
Sbjct 1036 GGTACGGAAGAGCA 1049
>seq577127
Length=16340
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/164 (73%), Gaps = 4/164 (2%)
Strand=Plus/Plus
Query 27889 CCCTTTCTGGGTTATCAGAACAT---CGTGTCAAAACTACATTTTTGACATATAATGGTC 27945
|||||| ||||| | |||||| || |||||| |||||||| || ||||||||||
Sbjct 7111 CCCTTT-TGGGTCAGAAGAACAAAAACGAGTCAAACGAACATTTTTTACTTATAATGGTC 7169
Query 27946 TCATCAAGGTTATATATAGATCTAATTCCGGTACAGCACATAAGTTCCGTAAGTGGGCCA 28005
| | |||||||| | || ||| ||||| ||||||| | || || ||| | ||||| |
Sbjct 7170 TTTTAAAGGTTATTTTTAAATCCAATTCAGGTACAGGATATCGATTTCGTGATTGGGCTA 7229
Query 28006 CAGGGGTTATATACACAGCACATTTAGGTACAGAAGAGCAGAGA 28049
| || |||| ||||| ||| | ||||| || || || |||
Sbjct 7230 CTAAAGTAGTATATACAGCTCATCTCGGTACTGATGAACAAAGA 7273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692274296658240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |