Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq741633 111 1e-19 seq1341392 91.5 1e-13 seq599987 82.4 7e-11 >seq741633 Length=11487 Score = 111 bits (122), Expect = 1e-19 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| || || |||||||| |||||||| || | ||| | | | ||||| || Sbjct 9301 AAATGTAGTGTAGATTCTTTCTGGATATTGTAGTCTGAAAGAGTGCGGCCA-TCCTCAAG 9243 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || |||| | | ||||||||| || |||||||||||||| || ||| Sbjct 9242 TTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCT-TGAA 9184 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||||| | | ||||| ||||| | | || || || | || | |||||| | Sbjct 9183 TTTTTGCTTTTACATTCTCAATAGTGTCAGATGCTTCAACCTCTAATGTTATGGTTTTCC 9124 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | || ||||||||||| |||||||||||| || Sbjct 9123 CTGTAAGAGTTTTTACAAAAATCTGCATGCCT 9092 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| ||||||||||| || ||| | | | || || |||||||| || Sbjct 8836 GTCGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGGCCA-TCTTCCAGCTGCTTACC 8778 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| || |||||||| || || || ||||| ||||| ||||||| ||| Sbjct 8777 AGCAAAAATGAGACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCCTT 8718 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||||| || | |||| ||| ||||| || || || Sbjct 8717 CACATTTTCAATTGTGTCTGAAGCTTCCACTTCCAGTGTGATGGTCTTGCCTGTGAGGGT 8658 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||| ||||||||||| Sbjct 8657 CTTTACAAAAATCTGCAT 8640 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| || ||| | | | || || ||||| || || Sbjct 9064 GTAGACTCTTTCTGAATGTTGTAATCTGACAAAGTGCGGCCA-TCTTCAAGCTGTTTTCC 9006 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | | ||| ||||| || || || ||||||||||| ||||||| ||| Sbjct 9005 TGCAAAAATCAATCTCTGTTGGTCTGGTGGTATACCTTCCTTGTCCTGGATCTTTGCCTT 8946 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| | | |||||| |||| || | |||||||| |||||||| Sbjct 8945 CACGTTCTCTATGGTGTCTGATGCCTCCACTTCGAGTGTTATAGTTTTGCCAGTCAGAGT 8886 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 8885 CTTTACAAAGATCTGCAT 8868 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || |||||||| || ||| | | | || || ||||||||||| Sbjct 11116 GTAGATTCCTTCTGAATGTTGTAATCTGACAGGGTGCGTCCA-TCTTCAAGCTGCTTGCC 11058 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || ||||| || ||||| || ||||| ||||| |||||| ||| Sbjct 11057 AGCAAAGATGAGACGTTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGGATCTTCGCCTT 10998 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | | |||||| || | ||| | |||||| || || || || Sbjct 10997 CACATTCTCAATGGTGTCCGACGCCTCCACTTCCAAGGTAATGGTTTTTCCAGTAAGGGT 10938 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 10937 CTTCACGAAGATCTGCAT 10920 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || |||||||| || || | | | || || ||||||||||| Sbjct 10888 GTGGATTCCTTCTGAATGTTGTAATCTGACAGGGTTCGTCCA-TCTTCCAGCTGCTTGCC 10830 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || |||||||| || || || ||||| ||||| |||||| ||| Sbjct 10829 AGCGAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCTTTGTCTTGTATCTTTGCCTT 10770 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | | |||||| || | || | || ||||| || || || Sbjct 10769 CACATTCTCAATGGTGTCTGAAGCCTCCACTTCCAATGTAATTGTCTTGCCTGTAAGTGT 10710 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 10709 CTTCACAAAAATCTGCAT 10692 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||||| |||||||| ||||| || || | | ||| ||| || || | Sbjct 11353 AAATGAAGAGTGGATTCTTTCTGAATATTATAGTC--CGAAAGTGTACGTCCATCTTCCA 11296 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||| ||||| || | ||||| ||||| || || || || ||||||||||| || || Sbjct 11295 ACTGTTTGCCTGCAAAGATGAGTCGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGGA 11236 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || ||| | | ||||| ||||||| | ||||| || | || | ||| || | Sbjct 11235 TTTTCGCCTTCACATTCTCAATTGTGTCGGAAGCTTCCACCTCCAGAGTAATGGTCTTCC 11176 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||||| || || |||||||||||| Sbjct 11175 CGGTAAGAGTCTTCACAAAAATCTGCATG 11147 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || |||||||| || || | | | || || || ||||| || Sbjct 9748 GTAGATTCCTTCTGAATGTTGTAATCCGACAGGGTTCGTCCA-TCTTCCAGTTGCTTACC 9690 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||| Sbjct 9689 AGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTT 9630 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | || || || | ||| | || ||||| || || || Sbjct 9629 CACATTTTCAATAGTGTCTGAAGCTTCTACCTCCAGGGTAATTGTCTTGCCAGTAAGGGT 9570 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 9569 CTTCACAAAAATCTGCAT 9552 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | ||| || || || | ||||| ||||| || || ||||| |||||||||||| Sbjct 10390 TCTTCCAACTGTTTTCCTGCAAAGATGAGTCGCTGTTGATCTGGAGGAATGCCTTCCTTG 10331 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| |||| | ||||| ||||| | | ||||| || | || | Sbjct 10330 TCTTGGATCTTTGCTTTGACATTCTCAATGGTGTCAGAAGCTTCCACCTCCAGAGTAATT 10271 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| || || ||||||||||| Sbjct 10270 GTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 10236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| |||||||| || | || | | | || || ||||||||||| Sbjct 9976 GTGGACTCTTTCTGAATATTGTAGTCAGATAGGGTCCGTCCA-TCTTCAAGCTGCTTGCC 9918 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || |||||||| ||||| || ||||| || || |||||| || Sbjct 9917 AGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCTTTATCCTGGATCTTCGCTTT 9858 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | ||||| || | ||| | |||||| || || || || Sbjct 9857 CACATTTTCGATGGTGTCTGAAGCTTCCACTTCCAGGGTAATGGTTTTTCCAGTAAGTGT 9798 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 9797 CTTCACAAAGATCTGCAT 9780 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || ||||| ||||||||||| | || | || ||||| || ||||| Sbjct 8324 GGTAGATTCCTTCTGAATATTGTAATCAGATAGAGTTCTCCCATCTTCGAGTTGTTTGCC 8265 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || |||| || | |||||| || || ||||| |||||||| || ||| ||| | || Sbjct 8264 AGCAAAAATCAGTCTCTGCTGATCAGGTGGGATCCCTTCCTTATC-CTGAATTTTCGCCT 8206 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || | | ||| || || | |||| |||||| || || || | Sbjct 8205 TCACATTCTCAATTGTATCAGATGCCTCTACTTCCAATGTGATGGTTTTACCAGTTAGTG 8146 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 8145 TCTTAACGAATATCTGCAT 8127 >seq1341392 Length=603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||| || || ||||| || |||||||| || ||| |||| || |||| Sbjct 486 AAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGACA--GTGTACGACCATCTTCGA 429 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || ||| | || |||| ||| || || || || ||||||||||| || | Sbjct 428 GTTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCTGGTGGAATGCCTTCCTTATCCTGAA 369 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | || || || || | || | ||| |||| Sbjct 368 TCTTCGCCTTGACATTTTCTATAGTGTCTGAGGCTTCAACTTCCAATGTTATGGTCTTGC 309 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || ||||| || |||||||| Sbjct 308 CTGTGAGGGTCTTTACAAATATCTGCAT 281 >seq599987 Length=38784 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| | ||||||| || || |||||| |||| || || | |||| |||| Sbjct 16960 TGTACTCGATAATCTCGGTACATAGGTTGCTGGATTTTATTGTACCTAGATTCTGCTGAT 17019 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 || ||| | ||||| || ||||||||||||||||| ||| |||||||||||| || Sbjct 17020 TGGACTTTCGATTGCATGCATCCTTGTACAGCATGTAAGGTGTGCCAGTTTCCACTTG 17077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474976091242080