Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq302910 114 1e-20 seq741633 98.7 9e-16 seq302911 86.0 6e-12 seq1341392 84.2 2e-11 >seq302910 Length=12142 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||| |||||||| || | || | ||| || || |||||||| | | ||| Sbjct 11150 CTTTTTGTATGTTGTAATCTGAGAGAGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAGA 11209 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 ||| |||||||||||||| ||||| |||||||| || ||||||| ||| | | || Sbjct 11210 TTAATCGCTGTTGATCTGGCGGTATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTT 11269 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || || | ||||| ||||| | || | ||||| || ||||||||||||| | Sbjct 11270 CAATTGTGTCTGATGGCTCAACTTCCAATGTTATTGTTTTCCCTGTCAGAGTTTTTACAA 11329 Query 132114 AAATCTGCATG 132124 ||||||||||| Sbjct 11330 AAATCTGCATG 11340 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||| || ||||| || | |||||| |||||| || ||||| || | ||| Sbjct 4320 CTTTTTGGATATTGTAATCTGAGAGGGTACGACCATCTTCTAGTTGTTTCCCTGCGAAGA 4379 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || | ||||||||| || || || ||||||||||| |||||| || | | || Sbjct 4380 TGAGCCTCTGTTGATCAGGTGGGATCCCTTCTTTATCCTGGATTTTTGCCTTAACATTTT 4439 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||||| | || |||||||| | || | ||||||||||| |||||||| | | Sbjct 4440 CTATGGTATCTGATGGTTCCACTTCCAGAGTTATTGTTTTACCAGTGAGAGTTTTCACAA 4499 Query 132114 AAATCTGCAT 132123 |||| ||||| Sbjct 4500 AAATTTGCAT 4509 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| | |||||||| ||||| |||||||| | |||||| |||||| Sbjct 3983 AACCAAATGTAATGTGGACTCTTTCTGAATATTGTAGTCAGATAAAGTACGCCCATCTTC 4042 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | | | || || | ||| || ||||| || || |||||||| || Sbjct 4043 CAATTGTTTTCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTG 4102 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| |||| | ||| | |||||| | || || ||||| | || | ||||| Sbjct 4103 GATTTTGGCCTTCACATTTTCAATAGTATCTGATGGTTCAACTTCCAGTGTTATTGTTTT 4162 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| || | || || | ||||| |||||| Sbjct 4163 ACCTGTTAATGTCTTGACAAAAATTTGCATG 4193 >seq741633 Length=11487 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||| || || || || |||||| |||||||| || | | Sbjct 9061 GACTCTTTCTGAATGTTGTAATCTGACAAAGTGCGGCCATCTTCAAGCTGTTTTCCTGCA 9002 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | | |||||| ||||| ||||| ||||| || || || ||| |||| Sbjct 9001 AAAATCAATCTCTGTTGGTCTGGTGGTATACCTTCCTTGTCCTGGATCTTTGCCTTCACG 8942 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||||||||||| || | ||||| ||||||||||| ||| Sbjct 8941 TTCTCTATGGTGTCTGATGCCTCCACTTCGAGTGTTATAGTTTTGCCAGTCAGAGTCTTT 8882 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 8881 ACAAAGATCTGCAT 8868 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| | || || ||||| | | || || || ||||||||||| || | ||| Sbjct 10685 ACGCAGCCTCAGCACTAAATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGATAAGGT 10626 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | |||||| ||||| || || | | |||| ||||||||||| |||||||| ||||| Sbjct 10625 CCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCC 10566 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| ||| || ||||| | ||| | || || | | ||| ||||| | Sbjct 10565 TTCTTTATCTTGAATCTTAGCTTTCACATTTTCAATTGTGTCAGATGCCTCAACTTCCAA 10506 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| || || || | ||||| ||||| Sbjct 10505 TGTAATTGTTTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 10464 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||| |||||||| | ||| || |||||| ||||| || || | | Sbjct 9973 GACTCTTTCTGAATATTGTAGTCAGATAGGGTCCGTCCATCTTCAAGCTGCTTGCCAGCA 9914 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || || |||||||| || ||||||||||| || || ||||| Sbjct 9913 AAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCTTTATCCTGGATCTTCGCTTTCACA 9854 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | | |||||||| | || | ||||| ||||| || || || Sbjct 9853 TTTTCGATGGTGTCTGAAGCTTCCACTTCCAGGGTAATGGTTTTTCCAGTAAGTGTCTTC 9794 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 9793 ACAAAGATCTGCAT 9780 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||||||||| || || ||| || |||||| ||||| || || | | Sbjct 11113 GATTCCTTCTGAATGTTGTAATCTGACAGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCA 11054 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || ||||||||||| || |||||||| || || || |||| Sbjct 11053 AAGATGAGACGTTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGGATCTTCGCCTTCACA 10994 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||||||||| | || | ||||| ||||| || || || Sbjct 10993 TTCTCAATGGTGTCCGACGCCTCCACTTCCAAGGTAATGGTTTTTCCAGTAAGGGTCTTC 10934 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 10933 ACGAAGATCTGCAT 10920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || ||||| ||||| || ||||| | ||||| |||||| Sbjct 11356 ACCAAATGAAGAGTGGATTCTTTCTGAATATTATAGTCCGAAAGTGTACGTCCATCTTCC 11297 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||| || | | |||| || |||||||||||||| || |||||||| ||||| Sbjct 11296 AACTGTTTGCCTGCAAAGATGAGTCGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGG 11237 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| |||| | || | || |||| | ||||| || | || | || || Sbjct 11236 ATTTTCGCCTTCACATTCTCAATTGTGTCGGAAGCTTCCACCTCCAGAGTAATGGTCTTC 11177 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || | |||||||||||| Sbjct 11176 CCGGTAAGAGTCTTCACAAAAATCTGCATG 11147 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | || || || ||||||||||| || || ||||| ||||||| Sbjct 8107 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGACAGTGTACGACCATCTTCG 8048 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | |||| || | |||||| ||||| || || ||||| ||||| | Sbjct 8047 AGTTGCTTCCCTGCGAAGATCAGCCTCTGTTGGTCTGGTGGAATACCTTCCTTATCCTGA 7988 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | ||| | || || | | ||| ||||| | || | || || Sbjct 7987 ATCTTGGCTTTGACATTTTCAATGGTGTCTGATGCCTCTACTTCAAGGGTGATTGTCTTG 7928 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | ||| |||||||| Sbjct 7927 CCAGTCAGGGTCTTCACGAAGATCTGCAT 7899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 || ||||||||| | | || || ||||| |||||||| || | ||| | ||| Sbjct 10448 CAGAACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAATCTGATAAGGTCCTTCCATC 10389 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | |||||| || | | |||| || ||||||||||||||||| |||||||| || || Sbjct 10388 TTCCAACTGTTTTCCTGCAAAGATGAGTCGCTGTTGATCTGGAGGAATGCCTTCCTTGTC 10329 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || ||| ||| | | || | || || | | ||||| || | || | || Sbjct 10328 TTGGATCTTTGCTTTGACATTCTCAATGGTGTCAGAAGCTTCCACCTCCAGAGTAATTGT 10269 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| ||||| || | ||||||||||| Sbjct 10268 CTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 10236 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| | ||| |||| || | | | || || || ||||| ||||| || | || Sbjct 8348 ACGCAACCTCAATACCAGGTGCAGGGTAGATTCCTTCTGAATATTGTAATCAGATAGAGT 8289 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | | ||||||||| ||||| || | | | || || | ||| ||||| || || || || Sbjct 8288 TCTCCCATCTTCGAGTTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGTGGGATCCC 8229 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| |||||| |||| | || | ||||| | | ||| ||||| | Sbjct 8228 TTCCTTATCCTGAATTTTCGCCTTCACATTCTCAATTGTATCAGATGCCTCTACTTCCAA 8169 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||| || || || | ||| |||||||| Sbjct 8168 TGTGATGGTTTTACCAGTTAGTGTCTTAACGAATATCTGCAT 8127 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| | || |||| ||| | | || || || ||||||||||| || || ||| Sbjct 9773 ACGCAGCCTCAGCACCAGATGCAAAGTAGATTCCTTCTGAATGTTGTAATCCGACAGGGT 9714 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || || ||||| | | |||| |||||||| || |||||||| ||||| Sbjct 9713 TCGTCCATCTTCCAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCC 9654 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||| |||| | ||| | ||| || | | || || || | Sbjct 9653 TTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATAGTGTCTGAAGCTTCTACCTCCAG 9594 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| || || || | ||||||||||| Sbjct 9593 GGTAATTGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 9552 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| | || |||| ||| | | || ||||| ||||||||||| || || |||| Sbjct 9544 CGCAATCTCAGCACCAGATGCAAAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTA 9485 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| || || || || | | ||||||| | |||||| || || ||||| ||| Sbjct 9484 CGTCCATCTTCCAGTTGCTTGCCTGCAAAGATTAGCCTCTGTTGGTCAGGTGGTATTCCT 9425 Query 132023 TCTTTATCGGTAATTTTT 132040 || ||||| ||||||| Sbjct 9424 TCCTTATCCTGAATTTTT 9407 >seq302911 Length=9965 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || || ||||| || || || || |||||| | |||||| || | | | | Sbjct 824 CTTTCTGTATATTGTAATCTGACAGAGTCCGTCCATCTTCCAACTGTTTCCCTGCAAAAA 883 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 |||| | ||| || ||||| || |||||||||||||| ||| ||| ||| | | || Sbjct 884 TTAGCCTCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGAATCTTTGCTTTGACATTTT 943 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || || | |||||| ||||| | || | ||||| ||||||| ||||| | | Sbjct 944 CTATTGTGTCTGACGGCTCAACTTCTAATGTTATTGTTTTGCCAGTCAACGTTTTCACAA 1003 Query 132114 AAATCTGCAT 132123 | || ||||| Sbjct 1004 ATATTTGCAT 1013 >seq1341392 Length=603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | || || || ||||||||||| || || ||||| ||||||| Sbjct 489 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGACAGTGTACGACCATCTTCG 430 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | |||| || | |||||||||||| || |||||||| ||||| | Sbjct 429 AGTTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCTGGTGGAATGCCTTCCTTATCCTGA 370 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | ||| | ||| || | | || ||||| | || | || || Sbjct 369 ATCTTCGCCTTGACATTTTCTATAGTGTCTGAGGCTTCAACTTCCAATGTTATGGTCTTG 310 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||| || |||||||| Sbjct 309 CCTGTGAGGGTCTTTACAAATATCTGCAT 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468285445761120