Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq741633 113 4e-20 seq1341392 96.9 3e-15 seq302910 91.5 1e-13 >seq741633 Length=11487 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||| |||| || ||| | ||||| | ||||| || || Sbjct 8127 ATGCAGATATTCGTTAAGACACTAACTGGTAAAACCATCACATTGGAAGTAGAGGCATCT 8186 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || |||||| ||||| || || || || || |||||| Sbjct 8187 GATACAATTGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGGATCCCACCTGATCAG 8246 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| |||| | ||||||||||||||||||| |||| | | ||||||||| Sbjct 8247 CAGAGACTGATTTTTGCTGGCAAACAACTCGAAGATGGGAGAACTCTATCTGATTACAAT 8306 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || ||||| ||| | || | || || || ||| | || || Sbjct 8307 ATTCAGAAGGAATCTACCCTGCACCTGGTATTGAGGTTGCGTGGTGG 8353 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| | || || ||| | || || | || || ||||| Sbjct 9095 CATGCAGATTTTTGTAAAAACTCTTACAGGGAAAACCATAACATTAGAGGTTGAAGCATC 9154 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| ||| | |||||| ||||||| ||||| || || || || || || || Sbjct 9155 TGACACTATTGAGAATGTAAAAGCAAAAATTCAAGATAAGGAAGGCATCCCACCTGACCA 9214 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | |||| | ||||||||||| || |||| | | | | || ||||| Sbjct 9215 GCAGAGATTGATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACTCTTTCAGACTACAA 9274 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || |||||||| || | ||||| ||| | || | |||||||| Sbjct 9275 TATCCAGAAAGAATCTACACTACATTTGGTGCTGAGGCTCAGAGGAGG 9322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || ||||| || || || | || || | || || ||||| Sbjct 9323 CATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATAACTTTGGATGTTGAAGCTTC 9382 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||||||| ||||| || || ||||| || || || Sbjct 9383 AGATACAATTGAGAATGTTAAGGCAAAAATTCAGGATAAGGAAGGAATACCACCTGACCA 9442 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || || || || | | ||||| ||||| ||||||| | | |||| | ||||| Sbjct 9443 ACAGAGGCTAATCTTTGCAGGCAAGCAACTGGAAGATGGACGTACCCTGTCTG--ATTAC 9500 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||||||||| | ||| | ||| | |||||| |||| || Sbjct 9501 AACATTCAGAAAGAATCCACTTTGCATCTGGTGCTGAGATTGCGAGGTGG 9550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||| | || |||||| | || || | ||||| ||||| Sbjct 9780 ATGCAGATCTTTGTGAAGACACTTACTGGAAAAACCATTACCCTGGAAGTGGAAGCTTCA 9839 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || || |||||||| ||||| || || || ||| Sbjct 9840 GACACCATCGAAAATGTGAAAGCGAAGATCCAGGATAAAGAAGGTATTCCTCCAGACCAG 9899 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | | ||||| || || ||||||| | | | || |||||| Sbjct 9900 CAACGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGACGGACCCTATCTGACTACAAT 9959 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| ||||| | ||| | ||| |||| ||| |||| || Sbjct 9960 ATTCAGAAAGAGTCCACTTTGCATCTGGTGCTAAGGTTGCGAGGTGG 10006 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || | ||||| || | || || | || || ||||| Sbjct 11147 CATGCAGATTTTTGTGAAGACTCTTACCGGGAAGACCATTACTCTGGAGGTGGAAGCTTC 11206 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || ||| | || || ||||| ||||| || || || || || ||||| Sbjct 11207 CGACACAATTGAGAATGTGAAGGCGAAAATCCAAGATAAGGAAGGCATTCCCCCAGATCA 11266 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||||||| | | |||||||| | ||||||| | | | || || || Sbjct 11267 ACAGCGACTCATCTTTGCAGGCAAACAGTTGGAAGATGGACGTACACTTTCGGACTATAA 11326 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGAT 25409 |||||| ||||||||||| ||||||| ||| || | |||||||| ||| | |||| Sbjct 11327 TATTCAGAAAGAATCCACTCTTCATTTGGTGCTACGTTTGAGAGGTGGATATTGAT 11382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || || | ||||| | ||||| || || Sbjct 7899 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTAGAGGCATCA 7958 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| || ||| ||||| || ||||| || || || || Sbjct 7959 GACACCATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGTATTCCACCAGACCAA 8018 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || || || || | || || || ||||||||||||| | | | |||| ||||||| Sbjct 8019 CAGAGGCTGATCTTCGCAGGGAAGCAACTCGAAGATGGTCGTACACTGTC--TGATTACA 8076 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||| || ||||| ||| | ||||| || ||||||||||||| || Sbjct 8077 ACATTCAGAAGGAATCTACCCTCCATTTGGTACTAAGATTGAGAGGTGG 8125 >seq1341392 Length=603 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| || | || || || | || || | ||||| |||||| Sbjct 281 ATGCAGATATTTGTAAAGACCCTCACAGGCAAGACCATAACATTGGAAGTTGAAGCCTCA 340 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| ||||| || || || || || ||||| Sbjct 341 GACACTATAGAAAATGTCAAGGCGAAGATTCAGGATAAGGAAGGCATTCCACCAGATCAA 400 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || || || || | || || || ||||||||||||| | | | |||| ||||||| Sbjct 401 CAGAGGCTGATCTTCGCAGGGAAGCAACTCGAAGATGGTCGTACACTGTC--TGATTACA 458 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||| || ||||| ||| | ||||| || ||||||||||||| || Sbjct 459 ACATTCAGAAGGAATCTACCCTCCATTTGGTACTAAGATTGAGAGGTGG 507 >seq302910 Length=12142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || |||||||| || ||| | || || | ||||| ||| ||| Sbjct 4193 CATGCAAATTTTTGTCAAGACATTAACAGGTAAAACAATAACACTGGAAGTTGAA-CCAT 4135 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | |||||||| || | || || ||||| || ||||| || || || || || | Sbjct 4134 CAGATACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGACC 4075 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || || |||| | || |||||| | ||||||| | | | | || |||| Sbjct 4074 AGCAGAGGCTTATTTTTGCTGGAAAACAATTGGAAGATGGGCGTACTTTATCTGACTACA 4015 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||||| ||||| ||||| | ||||| || |||| Sbjct 4014 ATATTCAGAAAGAGTCCACATTACATTTGGTTCTAAG 3978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| | || || ||| | || || | ||||| | ||||| Sbjct 11340 CATGCAGATTTTTGTAAAAACTCTGACAGGGAAAACAATAACATTGGAAGTTG-AGCCAT 11282 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || || || | |||||| ||||||| || ||||| || |||||||| |||| Sbjct 11281 CAGACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATACCGCCAGATC 11222 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | || || | || | | || |||||||| || |||| |||| | || ||||||| Sbjct 11221 AACAGCGATTAATCTTTGCTGGTAAACAACTTGAGGATGGAAGAACTCTCTCAGATTACA 11162 Query 25353 ATATTCAAAAAG 25364 | || ||||||| Sbjct 11161 ACATACAAAAAG 11150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | || || | ||||| ||| ||| | Sbjct 4509 ATGCAAATTTTTGTGAAAACTCTCACTGGTAAAACAATAACTCTGGAAGTGGAA-CCATC 4451 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || |||||| |||||||| || || || || ||||| Sbjct 4450 AGATACCATAGAAAATGTTAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATCA 4391 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || || ||||| | || || |||||||| ||||||| | | | || |||||||| Sbjct 4390 ACAGAGGCTCATCTTCGCAGGGAAACAACTAGAAGATGGTCGTACCCTCTCAGATTACAA 4331 Query 25354 TATTCAAAAAG 25364 ||| ||||||| Sbjct 4330 TATCCAAAAAG 4320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437319201709440