Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq791531 134 2e-26 seq599987 131 2e-25 seq599989 96.9 5e-15 >seq791531 Length=8839 Score = 134 bits (148), Expect = 2e-26 Identities = 164/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||| | ||| || |||||| || || ||||||| ||| | ||| | Sbjct 7339 CCTCATCTCTTGAAATAAGTTCATTGCTAAATGTAAGACCTGGCATTAAACCTCTCTTCT 7280 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || || |||||| ||||| ||||| |||||||| || || ||||||| Sbjct 7279 TAAGCCAGAAAATAGCTGCAAAACTGCCAGAGAAGAATATGCCTTCCACAGCAGCAAATG 7220 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA---TCATTATGTATCCACTTCTGTGCCCAATCAG 39815 ||| | | |||| | | | | | |||| | |||||| | ||||||| |||| Sbjct 7219 CAATTACACGCTCTGCAAATGTGGCAGATTCATCAGCAATCCACCTGAGTGCCCAGTCAG 7160 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | || ||||||||||| |||| ||||| |||||||| ||||| Sbjct 7159 CCTTTTTCTTTACACATGGCAAAGTTTCAATAGCATTGAAGAG 7117 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 ||||| || ||| |||| |||||||| || | ||||||||||| || ||||| | | Sbjct 7017 TTTCAGCAGAATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACAT 6958 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 | || || || || || || || || ||||||||||||||||| | ||| || ||| || Sbjct 6957 TCTCCATAGCAATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGAC 6898 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 || ||||| ||| ||||| || || || ||||||||||| || || || || | | Sbjct 6897 TGAACCTTTCAACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAA 6838 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGT 40075 |||| ||| |||| |||| || ||| Sbjct 6837 CATGGGAAATGAAATGCCTTTCTTCAGGT 6809 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||||||||||||||| ||||| || ||||| ||||| ||||| ||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATG 40222 || |||||| |||| || ||||| ||||| |||||||| |||| || | | || | Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTTCTCTCTCAGTAGA 6457 Query 40223 GGTTCCATAACTAAATCA 40240 ||||||| ||| |||| Sbjct 6456 GGTTCCAACTCTATATCA 6439 >seq599987 Length=38784 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||| || || | || || || ||||| |||||||||||||| | || Sbjct 15439 TGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAAGGAC 15498 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| ||||| || ||||| ||||| |||||||||||||| ||||||| ||| | | Sbjct 15499 TCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAGAGAG 15558 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || |||||| ||||| ||||| ||| |||||||||||| || Sbjct 15559 TTGCGAACACCATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAGTGAAGTA 15618 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||| ||||| ||| | ||| || |||| ||| Sbjct 15619 GGTTTAACATCCCACATATCATACTGTAAAAT 15650 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68442 CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATT 68501 |||| | || |||||||| |||||| || |||| |||| || || ||||| || || Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171 Query 68502 CATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTT 68561 | || ||||| ||||| ||||||||||||||||| || |||||||| ||||| | || Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231 Query 68562 TTGAGGAATTTCCCAAATAGTCTTA 68586 |||||||||||||| | ||| ||| Sbjct 2232 CTGAGGAATTTCCCACACAGTTTTA 2256 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 68980 TCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039 || ||||||||||| ||||| ||||| || || || || |||||||| || |||| || Sbjct 16328 TCTGCTAGTTCACAGCTTGCTTCTAAAGCTCCATAGTAGATTGTTTCAAATATCTGGATA 16387 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 || | | |||||| ||| ||| || |||||||| | ||||||||| ||||| || Sbjct 16388 TTTAACTTTTGTGCCTCTTCACTCTCAAATGGATACCTCATAAGAATAAACGCATCGGCA 16447 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 | || ||||| || ||||| ||||| | ||| | | | ||||| Sbjct 16448 AGGCCTTGAACACCGATACCAATAGGACGATGCCGCATGTTTGA 16491 >seq599989 Length=4882 Score = 96.9 bits (106), Expect = 5e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || ||| | |||||||| || |||||||| || ||||||| | |||||| Sbjct 4426 AGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCAGATAACAGATT 4485 Query 70050 GTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCA 70108 ||||| | ||||| | ||||| ||| ||| | || || || | || |||||||||| Sbjct 4486 ATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGCTACACGCATCA 4544 Query 70109 ACATATGCTGAGGTCGTTCTAC 70130 ||||||| ||||| ||||| || Sbjct 4545 ACATATGTTGAGGCCGTTCAAC 4566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 674909430590880