Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq741633 131 1e-25 seq302910 111 1e-19 seq1341392 105 6e-18 seq599987 100 2e-16 seq302911 95.1 1e-14 >seq741633 Length=11487 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||||| | |||| ||| || || || ||||| |||||||||||||| Sbjct 10008 TGCCACCTCGCAACCTTAGCACCAGATGCAAAGTGGACTCTTTCTGAATATTGTAGTCAG 9949 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | ||||| ||||| || || || | |||||||| || || || || | Sbjct 9948 ATAGGGTCCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCTGGAG 9889 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| |||||||| |||||| ||||| |||| | ||||||| ||||| | Sbjct 9888 GAATACCTTCTTTATCCTGGATCTTCGCTTTCACATTTTCGATGGTGTCTGAAGCTTCCA 9829 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| || || || | ||| || || || || ||||||||||| |||||| Sbjct 9828 CTTCCAGGGTAATGGTTTTTCCAGTAAGTGTCTTCACAAAGATCTGCATA 9779 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| ||||||| ||| |||| ||| | || || || || ||||||||||| || | Sbjct 8866 CCTCCTCGCAACCTCAACACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCAGAC 8807 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| ||||| ||||| || |||||||||| || || || || || Sbjct 8806 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATGAGACGTTGCTGGTCTGGTGGA 8747 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| |||| |||| | ||||||| ||||| ||| Sbjct 8746 ATTCCTTCTTTGTCCTGGATCTTTGCCTTCACATTTTCAATTGTGTCTGAAGCTTCCACT 8687 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || || ||||| || ||||| Sbjct 8686 TCCAGTGTGATGGTCTTGCCTGTGAGGGTCTTTACAAAAATCTGCAT 8640 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| || || || ||||| || || || || || ||||| ||||| || Sbjct 10690 CCTCCACGCAGCCTCAGCACTAAATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGAT 10631 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| ||||| || || || | |||||||||||||| || || || Sbjct 10630 AAGGTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGG 10571 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| ||||| |||| | ||||| | || |||||| Sbjct 10570 ATGCCTTCTTTATCTTGAATCTTAGCTTTCACATTTTCAATTGTGTCAGATGCCTCAACT 10511 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | |||||| || || || |||||||| |||||||| Sbjct 10510 TCCAATGTAATTGTTTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 10464 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || || |||| ||| || ||||| || || ||||| ||||| || | Sbjct 9778 CCACCACGCAGCCTCAGCACCAGATGCAAAGTAGATTCCTTCTGAATGTTGTAATCCGAC 9719 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| || || ||||| || | ||||||||||| || || || || Sbjct 9718 AGGGTTCGTCCATCTTCCAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 9659 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| |||| |||| | |||||||| ||||| || Sbjct 9658 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATAGTGTCTGAAGCTTCTACC 9599 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| || || || |||||||| || |||||| Sbjct 9598 TCCAGGGTAATTGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCATA 9551 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||||| || || | ||| | ||||| || || |||||||| || || | Sbjct 10234 CCACCACGCAACCTCAGGACAAGATGCAGAGTAGATTCCTTCTGAATATTATAATCAGAC 10175 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | ||||| ||||| || || || | || | | ||| || || ||||| Sbjct 10174 AAGGTCCGCCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGCGGA 10115 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| |||||| ||| | | |||| || || | ||||| ||| Sbjct 10114 ATGCCTTCTTTATCCTGGATCTTCGCTTTTACATTCTCTATGGTATCGGATGCTTCTACT 10055 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || |||| ||| || |||| ||||||||||| || ||||| Sbjct 10054 TCTAATGTAATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 10008 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | | || || |||||||||| ||||| ||||| || ||||||||||| Sbjct 9324 TGCCTCCTCTGAGCCTCAGCACCAAATGTAGTGTAGATTCTTTCTGGATATTGTAGTCTG 9265 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || || ||||| || || |||| | | ||| || || || | Sbjct 9264 AAAGAGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTG 9205 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| || || ||| | | || | |||||| | ||||||| Sbjct 9204 GGATGCCTTCCTTATCTTGAATTTTTGCTTTTACATTCTCAATAGTGTCAGATGCTTCAA 9145 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | |||| ||||| | ||| || || |||||||| ||||| || ||||| Sbjct 9144 CCTCTAATGTTATGGTTTTCCCTGTAAGAGTTTTTACAAAAATCTGCAT 9096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | |||||||| | || || ||||| |||||||| ||||| | Sbjct 11374 CCACCTCTCAAACGTAGCACCAAATGAAGAGTGGATTCTTTCTGAATATTATAGTC-CGA 11316 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || | ||||| | |||||| || || | ||||| ||||||||||| || || Sbjct 11315 AAGTGTACGTCCATCTTCCAACTGTTTGCCTGCAAAGATGAGTCGCTGTTGATCTGGGGG 11256 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||| || |||| | || | ||||| | ||||| || Sbjct 11255 AATGCCTTCCTTATCTTGGATTTTCGCCTTCACATTCTCAATTGTGTCGGAAGCTTCCAC 11196 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || ||||| |||||||| || ||||| Sbjct 11195 CTCCAGAGTAATGGTCTTCCCGGTAAGAGTCTTCACAAAAATCTGCAT 11148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||||| || ||||| || | | | | | ||||| Sbjct 10444 ACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAATCTGATAAGGTCCTTCCATCTTCC 10385 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||| || || | ||||| ||||||||||| || || | || || || || | Sbjct 10384 AACTGTTTTCCTGCAAAGATGAGTCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGG 10325 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | ||||| | ||||| || || ||||| || | ||| Sbjct 10324 ATCTTTGCTTTGACATTCTCAATGGTGTCAGAAGCTTCCACCTCCAGAGTAATTGTCTTG 10265 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| |||||||| || |||||| Sbjct 10264 CCAGTAAGAGTCTTCACAAAAATCTGCATA 10235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| | || |||| ||| || || || ||||| ||||| ||||| || | Sbjct 9550 CCACCTCGCAATCTCAGCACCAGATGCAAAGTGGATTCTTTCTGAATGTTGTAATCAGAC 9491 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| || || || || || | || || | |||||| || || || Sbjct 9490 AGGGTACGTCCATCTTCCAGTTGCTTGCCTGCAAAGATTAGCCTCTGTTGGTCAGGTGGT 9431 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| || || || | | || | || |||| |||||||| Sbjct 9430 ATTCCTTCCTTATCCTGAATTTTTGCCTTAACATTCTCAATTGTATCTGAAGCTTCAACA 9371 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | |||||||| |||||||||| || ||||||||||| ||||| Sbjct 9370 TCCAAAGTTATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 9324 >seq302910 Length=12142 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 ||||||| |||||||| || | | | || | ||||| || ||||| || ||| | | Sbjct 4320 CTTTTTGGATATTGTAATCTGAGAGGGTACGACCATCTTCTAGTTGTTTCCCTGCGAAGA 4379 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||| | ||||||||| || || | || |||||||| ||| || || | ||| Sbjct 4380 TGAGCCTCTGTTGATCAGGTGGGATCCCTTCTTTATCCTGGATTTTTGCCTTAACATTTT 4439 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 ||| || |||| | ||| ||||| |||||||| | ||| || || ||||||||||||| Sbjct 4440 CTATGGTATCTGATGGTTCCACTTCCAGAGTTATTGTTTTACCAGTGAGAGTTTTCACAA 4499 Query 27238 AGATTTGCATA 27248 | ||||||||| Sbjct 4500 AAATTTGCATA 4510 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||||||||| || || ||||| |||||||||||||| | | | | | ||| | ||||| Sbjct 3984 ACCAAATGTAATGTGGACTCTTTCTGAATATTGTAGTCAGATAAAG-TACGCCCATCTTC 4042 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| || || |||| || | ||| || || || || | || ||||| || Sbjct 4043 CAATTGTTTTCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTG 4102 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| |||| |||| | ||| |||| | ||||||||| || ||||| | ||| Sbjct 4103 GATTTTGGCCTTCACATTTTCAATAGTATCTGATGGTTCAACTTCCAGTGTTATTGTTTT 4162 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || || ||||| |||||||| Sbjct 4163 ACCTGTTAATGTCTTGACAAAAATTTGCAT 4192 >seq1341392 Length=603 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | ||||| || || ||||| ||||| || || | || | ||||| Sbjct 490 TACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGACAGTGTACGACCATCTTC 431 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||| || || || ||| | || || | ||||||||| || || | || || ||||| Sbjct 430 GAGTTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCTGGTGGAATGCCTTCCTTATCCTG 371 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | |||||| |||||||| |||||||||||| | ||||| | || Sbjct 370 AATCTTCGCCTTGACATTTTCTATAGTGTCTGAGGCTTCAACTTCCAATGTTATGGTCTT 311 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || || ||||| || |||||| Sbjct 310 GCCTGTGAGGGTCTTTACAAATATCTGCATA 280 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||||||||| || |||| | ||||| ||||| || || Sbjct 249 GTGGACTCCTTTTGAATATTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGCTTTCCA 190 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | |||||| || || || | ||| || ||||| |||||| ||| Sbjct 189 GCAAAGATCAGCCTCTGTTGGTCTGGTGGAATACCTTCCTTATCCTGAATCTTGGCTTTG 130 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||||| || || ||||| || || || | ||||| ||||| || Sbjct 129 ACATTTTCAATGGTGTCTGATGCCTCTACTTCAAGGGTGATTGTCTTGCCAGTCAGGGTC 70 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 69 TTCACGAAGATCTGCATACCT 49 >seq599987 Length=38784 Score = 100 bits (110), Expect = 2e-16 Identities = 149/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 ||||| || |||| || ||||| | || || ||||| || | ||||||||||| Sbjct 15439 TGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAAGGAC 15498 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || ||||| || | |||||| || || | ||| || ||||| ||||| || ||||| Sbjct 15499 TCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAGAGAG 15558 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || |||| ||| || | |||||| || | || |||||||||| || || ||| Sbjct 15559 TTGCGAACACCATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAGTGAAGTA 15618 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTA 130973 ||||| ||| | |||||||||| | |||| Sbjct 15619 GGTTTAACA---TCCCACATATCATACTGTA 15646 >seq302911 Length=9965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || |||||||| || || | || | ||||| | |||||| || || ||| Sbjct 824 CTTTCTGTATATTGTAATCTGACAGAGTCCGTCCATCTTCCAACTGTTTCCCTGCAAAAA 883 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | || | ||| || || || || | || |||||||| ||||| ||| | ||| Sbjct 884 TTAGCCTCTGCTGGTCTGGTGGAATGCCTTCTTTATCCTGAATCTTTGCTTTGACATTTT 943 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 ||| ||||||| | |||||||||| ||||| | |||||| |||| |||||||||| Sbjct 944 CTATTGTGTCTGACGGCTCAACTTCTAATGTTATTGTTTTGCCAGTCAACGTTTTCACAA 1003 Query 27238 AGATTTGCAT 27247 | |||||||| Sbjct 1004 ATATTTGCAT 1013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417696945451104