Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1228585 111 2e-19 seq1359195 107 2e-18 seq13652 107 2e-18 >seq1228585 Length=262 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 || || |||||||| ||||| |||||||||||| |||| ||| |||| |||||||| Sbjct 13 TATTTCACGCACGCGACGCCGACCCTGTTCAACTCTGGAACGCCCAACCCCCAGATGTCC 72 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||||||| | || |||| ||||| ||| ||||| || ||||| |||||| | ||| Sbjct 73 AGCTGCTTCATCATGCCGATTAAGGACGACAGCATCGAGGGTATCTATGAGACGTTGAAG 132 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||| || | | |||||| | | ||||| || || || Sbjct 133 CAGTGCGCGCTGGTTTCCAAGAGTGCCGGTGGAATTGGCAT 173 >seq1359195 Length=732 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||||| | |||||||| ||||| ||||| || || || || ||||| Sbjct 706 GTGAAGATGTATCTCGGGCTGGCCGAGTCCTTCCCACCGCTGAGACGTGTGCCGAACTGA 647 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || | |||| ||||||| |||||| || |||||||||| || | | Sbjct 646 CCGATGGGCTGCAGCACATTGATGTTGTTGCTGCCCACAAAGTTCTGAGCCAGGTTGATA 587 Query 152149 ATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | | || || | |||||||||||| ||||||| || || || | | | || Sbjct 586 ATTGTCGACATG-AGTGACTGTTCACCGTGGTGGTACGCCGAGTGTTCGGCCACGGAGCC 528 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTC 152235 |||||||| || || |||| ||| || Sbjct 527 TGCCAACTGGGCAACTTTCACCTCCCTC 500 Score = 100 bits (110), Expect = 3e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| | | ||| || | ||||| ||||| ||||| || ||||| || Sbjct 706 GTGAAGATGTATCTCGGGCTGGCCGAGTCCTTCCCACCGCTGAGACGTGTGCCGAACTGA 647 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || | || | ||||||| |||||||||||| ||||||| ||||| | Sbjct 646 CCGATGGGCTGCAGCACATTGATGTTGTTGCTGCCCACAAAGTTCTGAGCCAGGTTGATA 587 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | ||| | ||||| ||||| ||||||| || || |||||| ||| Sbjct 586 ATTGTCGACAT--GAGTGACTGTTCACCGTGGTGGTACGCCGAGTGTTCGGCCACGGAGC 529 Query 117483 CCGCCAGCTGAGCCACCTTCA 117503 | |||| ||| || || |||| Sbjct 528 CTGCCAACTGGGCAACTTTCA 508 >seq13652 Length=6622 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||||| | |||||||| ||||| ||||| || || || || ||||| Sbjct 2807 GTGAAGATGTATCTCGGGCTGGCCGAGTCCTTCCCACCGCTGAGACGTGTGCCGAACTGA 2748 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || | |||| ||||||| |||||| || |||||||||| || | | Sbjct 2747 CCGATGGGCTGCAGCACATTGATGTTGTTGCTGCCCACAAAGTTCTGAGCCAGGTTGATA 2688 Query 152149 ATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | | || || | |||||||||||| ||||||| || || || | | | || Sbjct 2687 ATTGTCGACATG-AGTGACTGTTCACCGTGGTGGTACGCCGAGTGTTCGGCCACGGAGCC 2629 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTC 152235 |||||||| || || |||| ||| || Sbjct 2628 TGCCAACTGGGCAACTTTCACCTCCCTC 2601 Score = 100 bits (110), Expect = 3e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| | | ||| || | ||||| ||||| ||||| || ||||| || Sbjct 2807 GTGAAGATGTATCTCGGGCTGGCCGAGTCCTTCCCACCGCTGAGACGTGTGCCGAACTGA 2748 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || | || | ||||||| |||||||||||| ||||||| ||||| | Sbjct 2747 CCGATGGGCTGCAGCACATTGATGTTGTTGCTGCCCACAAAGTTCTGAGCCAGGTTGATA 2688 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | ||| | ||||| ||||| ||||||| || || |||||| ||| Sbjct 2687 ATTGTCGACAT--GAGTGACTGTTCACCGTGGTGGTACGCCGAGTGTTCGGCCACGGAGC 2630 Query 117483 CCGCCAGCTGAGCCACCTTCA 117503 | |||| ||| || || |||| Sbjct 2629 CTGCCAACTGGGCAACTTTCA 2609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537656875221600