Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq600855 102 7e-17 >seq600855 Length=4662 Score = 102 bits (112), Expect = 7e-17 Identities = 225/332 (68%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||| | || || || || || || |||||| | |||||||| || || || || || Sbjct 2251 GGTGACCTTGGTCCAGTGTATGGTTTTCAGTGGCGCCACTTTGGAGCAGATTA-CGAAGG 2309 Query 34454 AGC-GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 | | || | ||||| ||| | || | || || || ||| | ||||| |||| | Sbjct 2310 AACTGATTCCAACTATGAGGGCAAAGGTGTTGATCAACTTCAGCATGTGATACACACACT 2369 Query 34513 GAAGCGGAAC-CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571 | || || || ||||| | | ||| | ||||| ||||||||||| ||| | Sbjct 2370 -ACGCACAAATCCAGATGATCGCCGCATCATCATGTGTGCGTGGAACCCACGAGATTTGG 2428 Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 || ||||| || ||||| ||||| | | ||||| || || || |||||||||| Sbjct 2429 GCCTTATGGCTCTGCCCCCTTGCCATTGCTTGGTACAATTTTATGTAGCAAATGGGGAGC 2488 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| |||||||| || ||| |||| | ||| ||||| | || || || || || | | Sbjct 2489 TGTCATGCCAGCTATACCAAAGATCAGCAGATATGGGACTTGGTGTTCCATTTAATGTAG 2548 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 | || || ||||| | || | |||| | ||| Sbjct 2549 CCAGCTATGCTCTATTGACATGCATGTTAGCT 2580 Score = 102 bits (112), Expect = 7e-17 Identities = 225/332 (68%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 6622 AGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCAT 6681 ||| | |||| | || | ||||| || || || | || || || || || | ||||| Sbjct 2580 AGCTAACATGCATGTCAATAGAGCATAGCTGGCTACATTAAATGGAACACCAAGTCCCAT 2521 Query 6682 GTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCA 6741 ||| | |||| ||| || |||||||| |||||||||||||| || || || ||||| Sbjct 2520 ATCTGCTGATCTTTGGTATAGCTGGCATGACAGCTCCCCATTTGCTACATAAAATTGTAC 2461 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801 | | ||||| ||||| || ||||| || | ||| ||||||||||| ||||| Sbjct 2460 CAAGCAATGGCAAGGGGGCAGAGCCATAAGGCCCAAATCTCGTGGGTTCCACGCACACAT 2401 Query 6802 CACGATCCTTCTGTCATCAGG-GTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGT 6860 | ||| | | ||||| || || || | | |||| ||||| | ||| || || | Sbjct 2400 GATGATGCGGCGATCATCTGGATTTGTGCGT-AGTGTGTGTATCACATGCTGAAGTTGAT 2342 Query 6861 CCGCTCCCTGTCCCGAATAGTCCGCTTC-GCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 | | || | ||| ||||| | || | ||| || || || || |||||||| | | Sbjct 2341 CAACACCTTTGCCCTCATAGTTGGAATCAGTTCCTTCG-TAATCTGCTCCAAAGTGGCGC 2283 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 ||||| || || || || || || | ||| || Sbjct 2282 CACTGAAAACCATACACTGGACCAAGGTCACC 2251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440431861026240