Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq741633 98.7 7e-16 seq302910 84.2 2e-11 >seq741633 Length=11487 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||||||||||| || ||||| | || || ||| | Sbjct 10236 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACTCTGGAGGTGGAAGCTTCT 10295 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||| || ||||| ||||| |||| || | Sbjct 10296 GACACCATTGAGAAT--GTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATC 10353 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| |||||||| ||||| || | | | | ||| || ||||||| Sbjct 10354 AACAGCGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGAAGGACCTTATCAGATTACA 10413 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||||||||| || ||| ||||||||||| || Sbjct 10414 ACATCCAAAAGGAATCTACTCTGCATTTGGTTCTG 10448 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || ||||| || || |||||| | || || || | Sbjct 10692 ATGCAGATTTTTGTGAAGACACTTACAGGCAAGACAATTACATTGGAAGTGGAGGCTTCA 10751 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| ||| |||||||||||| |||| || | Sbjct 10752 GACACCATTGAGAAT--GTGAAGGCAAAGATACAAGACAAAGAAGGTATTCCACCAGACC 10809 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || || || || || || |||| || | ||| | | |||| ||||||| Sbjct 10810 AGCAACGTCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGACGAACCCTGTCAGATTACA 10869 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || |||||||||| |||| || | ||||||| || Sbjct 10870 ACATTCAGAAGGAATCCACTTTGCATCTGGTGCTGAGGCTGCGTGGTGG 10918 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 ||||| || ||||||||||| | ||||| ||| ||||||| | || || | ||||| | Sbjct 10008 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATTACATTAGAAGTAG-AAGCATC 10066 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || | ||| || ||| || || || |||||||| ||||| || Sbjct 10067 CGATACCATAGAGAAT--GTAAAAGCGAAGATCCAGGATAAAGAAGGCATTCCGCCAGAC 10124 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | || || ||||| ||||| || |||| || | || | |||||| ||||| Sbjct 10125 CAGCAGAGATTGATCTTTGCAGGAAAGCAGCTGGAAGATGGGCGGACCTTGTCTGATTAT 10184 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || ||| ||||| | || || | |||||||| || Sbjct 10185 AATATTCAGAAGGAATCTACTCTGCATCTTGTCCTGAGGTTGCGTGGTGG 10234 >seq302910 Length=12142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| || || | || || ||| || ||| | || || ||| | || Sbjct 4192 ATGCAAATTTTTGTCAAGACATTAACAGGTAAAACAATAACACTGGAAGTTGAACCATCA 4133 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || || ||||| ||||||||||| |||| || | Sbjct 4132 GATACTATTGAAAAT--GTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGACC 4075 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| |||||||||||||| || | || | || || || |||| Sbjct 4074 AGCAGAGGCTTATTTTTGCTGGAAAACAATTGGAAGATGGGCGTACTTTATCTGACTACA 4015 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 | || || |||||| ||| || ||||||||| Sbjct 4014 ATATTCAGAAAGAGTCCACATTACATTTGGTT 3983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349801375179084