Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq599987 134 2e-26 seq791531 127 3e-24 seq599990 100 4e-16 seq599989 91.5 2e-13 >seq599987 Length=38784 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||||||||| || | || || || ||||| |||||||||||||| | || Sbjct 15439 TGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAAGGAC 15498 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||||||||| | ||||| ||||| || ||||||||||| ||||||| ||| | | Sbjct 15499 TCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAGAGAG 15558 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | | |||||| ||||| ||||| ||| |||||||||||| | | Sbjct 15559 TTGCGAACACCATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAGTGAAGTA 15618 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 ||| ||||||||| | ||| || |||| ||| Sbjct 15619 GGTTTAACATCCCACATATCATACTGTAAAAT 15650 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 76850 CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATT 76909 |||| | || |||||||| ||| || || |||| | || || || ||||| || || Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171 Query 76910 CATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTT 76969 | |||||||| ||||| |||||||||||||||||||| |||||||| ||||| || || Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231 Query 76970 TTGAGGAATTTCCCAAATAGTTTT 76993 |||||||||||||| | |||||| Sbjct 2232 CTGAGGAATTTCCCACACAGTTTT 2255 Score = 105 bits (116), Expect = 9e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 77357 TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 ||| | ||| || || ||||| || | || ||||||||||| || ||||| || || Sbjct 16297 TCCTTCATAAGTCTCGTAAGGACCCAAAGCCTCTGCTAGTTCACAGCTTGCTTCTAAAGC 16356 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 ||| || || |||||||| || |||| |||| | | |||||| || ||| ||||| Sbjct 16357 TCCATAGTAGATTGTTTCAAATATCTGGATATTTAACTTTTGTGCCTCTTCACTCTCAAA 16416 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 ||||| | ||||||||| ||||| || | || ||||| || ||||||||||| | Sbjct 16417 TGGATACCTCATAAGAATAAACGCATCGGCAAGGCCTTGAACACCGATACCAATAGGACG 16476 Query 77537 ATG 77539 ||| Sbjct 16477 ATG 16479 >seq791531 Length=8839 Score = 127 bits (140), Expect = 3e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||| | ||| || |||||| ||||| ||||||| || | || || Sbjct 7337 TCATCTCTTGAAATAAGTTCATTGCTAAATGTAAGACCTGGCATTAAACCTCTCTTCTTA 7278 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || || || ||| ||||| |||||||||||||| || || |||||||| Sbjct 7277 AGCCAGAAAATAGCTGCAAAACTGCCAGAGAAGAATATGCCTTCCACAGCAGCAAATGCA 7218 Query 48285 GTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCC 48341 | | | |||| | | |||| ||| | ||||||| ||||||| |||||| Sbjct 7217 ATTACACGCTCTGCAAATGTGGCAGATTCATCAGCAATCCACCTGAGTGCCCAGTCAGCC 7158 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 || ||||||||||| |||| ||||| |||||||| ||||| || Sbjct 7157 TTTTTCTTTACACATGGCAAAGTTTCAATAGCATTGAAGAGGAA 7114 Score = 113 bits (124), Expect = 6e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || |||| ||||||||||||||| ||||| || || || |||||||||||||||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATA 48746 || |||||| || || ||||||||||| |||||||| |||| || | | || | | Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTTCTCTCTCAGTAGA 6457 Query 48747 GGTTCCA 48753 ||||||| Sbjct 6456 GGTTCCA 6450 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| ||| ||||| || | |||||||||||| || || || | ||| || || || Sbjct 7007 ATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACATTCTCCATAGC 6948 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || || || || || |||||||| ||||| || | || || || || || | ||| Sbjct 6947 AATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTGAACCTTTC 6888 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | ||| || || || || || |||||||||||||| || || |||| ||||| ||| Sbjct 6887 AACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAACATGGGAAAT 6828 Query 48581 AAAAT 48585 |||| Sbjct 6827 GAAAT 6823 >seq599990 Length=15331 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 78752 tttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATC 78811 |||||| ||||| |||||||| || || || || |||||||| ||||| | ||||||||| Sbjct 7562 TTTTTTAGTTTCTTTGTGTAGGTTTGAAACTGCAATTCTTGCCGCTAGTACAGCATAATC 7621 Query 78812 AGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGT 78871 |||||||| || || || ||||| |||| || || | |||| | ||||| || Sbjct 7622 AGGATGTTTGGTTGTCATTGTTGCTGCAGTTTCAGCTGCAAGGTTATCCAGCTCTACGGT 7681 Query 78872 TGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 ||| || ||| ||||| || |||||||||| Sbjct 7682 TGTTACACCAGAATATAAACCACTGATAACTTTCA 7716 >seq599989 Length=4882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| || ||| | || ||||| ||||| || || || ||||||| | ||||| Sbjct 4426 AGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCAGATAACAGATT 4485 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||| | ||||| | ||||||||| || | || || || || ||||||||||||| Sbjct 4486 ATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGCTACACGCATCA 4544 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||||||| ||||| | |||||| Sbjct 4545 ACATATGTTGAGGCCGTTCAAC 4566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682533873866880