Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq791531 150 3e-31 seq599987 129 8e-25 seq599989 102 1e-16 >seq791531 Length=8839 Score = 150 bits (166), Expect = 3e-31 Identities = 168/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||| | ||| || |||||| || || ||||||| || | ||| || Sbjct 7337 TCATCTCTTGAAATAAGTTCATTGCTAAATGTAAGACCTGGCATTAAACCTCTCTTCTTA 7278 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || ||||| || ||| ||||| |||||||||||||| ||||| || ||||| Sbjct 7277 AGCCAGAAAATAGCTGCAAAACTGCCAGAGAAGAATATGCCTTCCACAGCAGCAAATGCA 7218 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA---TCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 | | | |||| | | ||||| |||| | ||||||||| | ||||| |||||| Sbjct 7217 ATTACACGCTCTGCAAATGTGGCAGATTCATCAGCAATCCACCTGAGTGCCCAGTCAGCC 7158 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||||||||||| |||| ||||| |||||||| ||||| || Sbjct 7157 TTTTTCTTTACACATGGCAAAGTTTCAATAGCATTGAAGAGGAA 7114 Score = 125 bits (138), Expect = 1e-23 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || |||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| | Sbjct 6576 TTCGATAAATCTACTTCTTCAGCCGTCCAGAAAGACGCTTCTGCTTTTTTATACATAGCC 6517 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATA 47235 || |||||| |||| || || || ||||| |||||||| |||| || | | |||| | Sbjct 6516 CAAATATCATGATACTGAATTGGGAAAATGACAAATCTTCTTGGGTTCTCTCTCAGTAGA 6457 Query 47236 GGTTCCA 47242 ||||||| Sbjct 6456 GGTTCCA 6450 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46880 TTTCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGT 46939 ||||| || ||| |||| |||||||| || | |||||||||||| || ||||| | | Sbjct 7017 TTTCAGCAGAATCCTTAATGTATGTATCAATGAGAAGACTATACATCTCAGAATGCACAT 6958 Query 46940 TTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTAC 46999 | || ||||| || || || || || ||||||||||||||||| | || || ||| || Sbjct 6957 TCTCCATAGCAATTTGGAAGCCATAGAAACATCTTGCTTCAGTTACTTGAACTTCTTGAC 6898 Query 47000 AAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATA 47059 || | |||| || || || || || || |||||||||||||| || || || | | Sbjct 6897 TGAACCTTTCAACCAGGTTTTCGTTAACAATGCCATCACTAGCAGCGAAGAAAGCTAGAA 6838 Query 47060 CATGTTTAATAAAAT 47074 |||| ||| |||| Sbjct 6837 CATGGGAAATGAAAT 6823 >seq599987 Length=38784 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 75445 CCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATT 75504 |||| | || |||||||| |||||| || |||| | || || || ||||| || || Sbjct 2112 CCATGCATAAAAATGCATTGATGTTAGCTTTCCATAATTTGGCTCAGCAATATGTATGTT 2171 Query 75505 CATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTT 75564 | |||||||| ||||| |||||||||||||||||||| |||||||| ||||| || || Sbjct 2172 GAGAGACTGACTCTGATCAATGAAAGCTCCTCTATCAGCTGCCATTTTGATAATTGTTTT 2231 Query 75565 TTGAGGAATTTCCCAAATAGTTTT 75588 |||||||||||||| | |||||| Sbjct 2232 CTGAGGAATTTCCCACACAGTTTT 2255 Score = 127 bits (140), Expect = 3e-24 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 ||||| || |||||||| | |||||||| ||| || ||||| || | |||||| |||| Sbjct 36365 TTATTTCCACCCTGATCCACATATCTGGAAGTATTGTTATATACACGCAACATAGGAACC 36424 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 | || || ||||||||||| || |||| ||| ||||||||| ||||| ||| | Sbjct 36425 AGACCATTGGATGTACCATTGGTGCCAGCAATGTAACTTCCAGCAGCACGGATA----CA 36480 Query 76868 ATAGA----TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGT 76923 || || ||||| || || ||||| ||| ||||| | ||||| | ||||| || Sbjct 36481 ATGGACGCTAAGGCCAATACCACCTGCAGATTTGGAGATCATGGCACATTGCTTCAAAGT 36540 Query 76924 GTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || || ||||| || ||| ||||| | || |||||||| Sbjct 36541 ATCATAAATACCTTCAATACTGTCCTCCTTCATGCACAACAGGAAACAGCT 36591 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||||||||| || | || || || ||||| |||||||||||||| | || Sbjct 15439 TGAAATTCTCCAGACAAAACGCGGCGTGTATATATATTGCTGGTATATGGTTCAAAGGAC 15498 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||||||||| | ||||| ||||| || ||||| ||||| ||||||| ||| | | Sbjct 15499 TCATTGTTTCCAAGTATTTGGGCAGTCGATGCAGTTGGCATTGGTGCCAACAAGAGAGAG 15558 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || | | |||||| ||||| ||||| ||| |||||||||||| | Sbjct 15559 TTGCGAACACCATGAACAGCAATTTTTTCTTTGAGAGCAGCCCAATCCCAAAGTGAAGTA 15618 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||| ||||||||| | ||| || |||| ||| Sbjct 15619 GGTTTAACATCCCACATATCATACTGTAAAAT 15650 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 75983 TCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 76042 || |||||||| || || || ||||| || || || || |||||||| || |||| || Sbjct 16328 TCTGCTAGTTCACAGCTTGCTTCTAAAGCTCCATAGTAGATTGTTTCAAATATCTGGATA 16387 Query 76043 TTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCT 76102 || | | ||| || || ||| ||||| ||||| | ||||||||| ||||| || Sbjct 16388 TTTAACTTTTGTGCCTCTTCACTCTCAAATGGATACCTCATAAGAATAAACGCATCGGCA 16447 Query 76103 AGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 || || ||||| || ||||||||||| | ||| Sbjct 16448 AGGCCTTGAACACCGATACCAATAGGACGATG 16479 >seq599989 Length=4882 Score = 102 bits (112), Expect = 1e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| || ||| | |||||||| ||||||||||| || ||||||| | ||||| Sbjct 4426 AGTTCCAGCTCCAAAGAGGGTAGGAGAAGCATGAGTGAAGTATCTTTCAGATAACAGATT 4485 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||| | ||| | || ||||| ||| || | || || || ||||| |||||||||| Sbjct 4486 ATATGTCTGTATAGCAGCATCTATGTCCTCACCG-TGTATGCCAACAGCTACACGCATCA 4544 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||| ||||| ||||| ||| Sbjct 4545 ACATATGTTGAGGCCGTTCAACA 4567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700480398493440