Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq1291351 147 6e-31 seq217096 122 2e-23 seq1263006 102 2e-17 >seq1291351 Length=394 Score = 147 bits (162), Expect = 6e-31 Identities = 254/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 814 GCCCGGATCGGTTACACGAAGCTGTTGCTGGCCAACATCGGCTACAAGATCCAGCACAAG 873 || ||| |||| | || ||| || ||| || |||| || |||||| |||| |||||| Sbjct 33 GCGCGGGTCGGCTTTACCAAGATGCTGCACGCTAACAAGGGGTACAAGCTCCACCACAAG 92 Query 874 CGCCGCAACGTGATGATGTGGAGTCCGACCGACCCGGACGCCGAGGACATCA-GCAAGAG 932 || |||||||| ||| | | || ||||| || ||||| || | || || | ||||| Sbjct 93 CGGCGCAACGTCCTGAGCTACTGCCCCACCGATCCTGACGCGGAAGCCAACATGAAAGAG 152 Query 933 CCACGTCAATGGCCTGATCCGCGACGTGCCGGTCATGCTGGAACTGGCGCCCTGGTTCGG 992 | | || | | || |||||||||| ||| || || ||||| |||||| |||| Sbjct 153 C-ATGTTGAGCCCATGCTCCGCGACGTCGAGGTGCTGACCGAGCTGGCCCCCTGGATCGG 211 Query 993 TCGGAAGCACAGCGACAACACCTTGGACAACAAGGTGTTCGCGAACCGGCGCAACCTCTG 1052 ||||| |||||| | || || | |||| | | ||||| | |||| | Sbjct 212 CAAAAAGCATCGCGACAGCTCCCTGACCCGCAAGCGCCTGACCAACCG-CAAGACCTATT 270 Query 1053 GATACGCGG-CGGCAAGGCCTCTCGGAACTACCGGGAGAAGTCGCCCGACGAGGTAATCT 1111 | | | || ||||||||| || |||||||| | ||| || | || ||||| || | Sbjct 271 GGTGCCTGGGCGGCAAGGCGGGGCGCAACTACCGCGGGAAATCTACGGATGAGGTCATTT 330 Query 1112 ACGACGAATTGTCGAAATTCGACGCCGACGTCGAGGGCGAAGGCTCGCCGACATTCCTGG 1171 ||||||| |||| || ||||||||| ||||| ||||| ||||||||||||||||| | Sbjct 331 ACGACGAGCTGTCCAAGTTCGACGCCTCGGTCGAAGGCGAGGGCTCGCCGACATTCCTCG 390 Query 1172 GTGA 1175 | || Sbjct 391 GCGA 394 >seq217096 Length=301 Score = 122 bits (134), Expect = 2e-23 Identities = 179/252 (71%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 5744 CGCCGAGTACAAGTACGTCACCCTCGGCGAGCGCGGCGAACAGATCATCCTGGCCACCTA 5803 || |||||||||| | | |||| |||| || |||||||| | ||||| || || ||||| Sbjct 58 CGGCGAGTACAAGCAGGGCACCATCGGTGACCGCGGCGAGAAAATCATTCTCGCGACCTA 117 Query 5804 CGGAGAGCTGTTCAGCATCACCCGTCAGGCGATCATCAACGACGACCTGCAGATGCTCTC 5863 ||| | || |||| |||| ||||| |||||||||||||||||| || || Sbjct 118 CGGCAAACTCTTCA------CCCGCCAGGCCATCATCAACGACGACCTG--TCCGCCTTC 169 Query 5864 GG--ATATCCCGTTCAAGCTGGGCCAGGCTGCCAAGGCCACCATCGGCGACCTGGTCTAT 5921 || || ||| | |||| | || || | |||| | || |||||||||||| Sbjct 170 GGCCGCATTCCGCGCGCCATGGGTCGCGCAGCAATTCGCACCGTTGGTGACCTGGTCTAT 229 Query 5922 GCGGTTCTGACCGGTAACCCGGCGATGAGCGATGGCAAGACTCTCTTCCATGCCGACCAC 5981 || | |||| | |||| ||| ||| ||| || ||| | || ||||| ||||||||| Sbjct 230 GCCCTGCTGAAAGCGAACCGGGCTATGTCCGACGGTAAGGCGCTGTTCCACGCCGACCAC 289 Query 5982 AGCAACCTGCTC 5993 ||||||||||| Sbjct 290 GGCAACCTGCTC 301 >seq1263006 Length=321 Score = 102 bits (112), Expect = 2e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 42615 GTGTTCGACCGCCCGACCCCGTACACCCTGAACAGCCTGCGCATGGTGCCAGCCAGGAAA 42674 ||||||||||| || |||||||||||||| |||| |||||| || | || |||| ||| Sbjct 95 GTGTTCGACCGGCCTACCCCGTACACCCTCGACAGTCTGCGCCTGATACCGGCCACCAAA 154 Query 42675 GACCGGCTGGAAGCGCGGGTTTGGTTCAAGGACGAAGCGGACGGTGCGCAGCCTGCATCG 42734 || || || || ||||| ||| ||||||||||||||||| ||| ||| || || Sbjct 155 GAGCGCTTGAGTGCTCGGGTCTGGATCAAGGACGAAGCGGACAAGGCGTCGCCGGCCACG 214 Query 42735 GTGTGGATTGCCCCTGAGGTCTACGGTGGCCCGCGTCGGAACAAGCCGG 42783 ||| | |||| ||||| | ||| ||| || ||| | |||| || Sbjct 215 CGCTGGCTGACCCCCGAGGTATTCGGCGGCAATCGCCGGGAAAAGCGGG 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136068606049656