Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq741633 114 1e-20 seq1287555 89.7 5e-13 seq1341392 87.8 2e-12 >seq741633 Length=11487 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | | || |||||||||||| || |||||||||||||| || || || Sbjct 11147 GCCACCGCGCAACCTTAGCACCAGATGCAGAGTAGATTCCTTCTGAATGTTGTAATCTGA 11088 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| || || || || || || || || | || Sbjct 11087 CAGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 11028 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || | || |||||| ||| || ||||| | | ||||| || |||||| Sbjct 11027 AATCCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATGGTGTCCGACGCCTCCAC 10968 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 10967 TTCCAAGGTAATGGTTTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 10920 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||||| ||||| ||| || ||| || |||||||| |||||||| || || || || | Sbjct 11363 ACGTAGCACCAAATGAAGAGTGGATTCTTTCTGAATATTATAGTCCGAAAGTGTACGTCC 11304 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || | ||| ||||| || || || || |||||||| || | ||||| || ||||| Sbjct 11303 ATCTTCCAACTGTTTGCCTGCAAAGATGAGTCGCTGTTGATCTGGGGGAATGCCTTCCTT 11244 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 || |||||| ||||| | | |||||| | |||||||||| || || Sbjct 11243 ATCTTGGATTTTCGCCTTCACATTCTCAATTGTGTCGGAAGCTTCCACCTCCAGAGTAAT 11184 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || ||||| || |||||||||||| Sbjct 11183 GGTCTTCCCGGTAAGAGTCTTCACAAAAATCTGCATG 11147 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| || |||||||||||||| || || || ||||| || | || || Sbjct 9761 CACCAGATGCAAAGTAGATTCCTTCTGAATGTTGTAATCCGACAGGGTTCGTCCATCTTC 9702 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 || ||||| || || || || || ||||| ||||| | |||| || ||||||||| Sbjct 9701 CAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTG 9642 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| ||| ||||| | |||||| | || ||||||| || || || || Sbjct 9641 GATCTTTGCCTTCACATTTTCAATAGTGTCTGAAGCTTCTACCTCCAGGGTAATTGTCTT 9582 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| || ||||||||||| Sbjct 9581 GCCAGTAAGGGTCTTCACAAAAATCTGCAT 9552 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| ||| |||||||||||||| || || || ||||| || | || || Sbjct 10901 CACCAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGACAGGGTTCGTCCATCTTC 10842 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| ||||| || || || || ||||| | |||| | || ||||| Sbjct 10841 CAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCTTTGTCTTG 10782 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || ||| ||||| | | ||||| | |||||| |||| || || || || Sbjct 10781 TATCTTTGCCTTCACATTCTCAATGGTGTCTGAAGCCTCCACTTCCAATGTAATTGTCTT 10722 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| || ||||||||||| Sbjct 10721 GCCTGTAAGTGTCTTCACAAAAATCTGCAT 10692 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| ||| || ||||||||||| || || || ||||| || | || || Sbjct 9533 CACCAGATGCAAAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTACGTCCATCTTC 9474 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 || |||||||| || || || || | ||||||||| | || | | ||||| ||| | Sbjct 9473 CAGTTGCTTGCCTGCAAAGATTAGCCTCTGTTGGTCAGGTGGTATTCCTTCCTTATCC-T 9415 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCT--CGACTCCACCTCCACCGTTATCGTT 41830 || ||||||| | ||| || | ||| || | || || |||| ||||| || Sbjct 9414 GAATTTTTGCCTTAACATTCTCA-ATTGTATCTGAAGCTTCAACATCCAAAGTTATAGTC 9356 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||||| ||||| || || ||||||||| Sbjct 9355 TTGCCCGTCAATGTCTTCACAAAGATCTGCATG 9323 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || ||| ||||||||||| || || || | ||||| | || || Sbjct 9076 ACCAGGTGAAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAAGTGCGGCCATCTTCA 9017 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| | ||||||||| | || | | ||||||||| | Sbjct 9016 AGCTGTTTTCCTGCAAAAATCAATCTCTGTTGGTCTGGTGGTATACCTTCCTTGTCCTGG 8957 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||||| | | ||||| | |||||| || | ||||| ||||| Sbjct 8956 ATCTTTGCCTTCACGTTCTCTATGGTGTCTGATGCCTCCACTTCGAGTGTTATAGTTTTG 8897 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| |||||||| || |||||||| Sbjct 8896 CCAGTCAGAGTCTTTACAAAGATCTGCAT 8868 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||||||| || || ||||||||||| || || || || || ||||| | || Sbjct 8851 AACACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGGCCATCT 8792 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| || || || || || || || ||||| | |||| | || |||||| Sbjct 8791 TCCAGCTGCTTACCAGCAAAAATGAGACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCC 8732 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| ||| ||||| | ||||| | ||||| |||| || || || Sbjct 8731 TGGATCTTTGCCTTCACATTTTCAATTGTGTCTGAAGCTTCCACTTCCAGTGTGATGGTC 8672 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||||||| ||||||||||| Sbjct 8671 TTGCCTGTGAGGGTCTTTACAAAAATCTGCAT 8640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || || |||||||||||||| || || || || || || | || ||| Sbjct 8107 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGACAGTGTACGACCATCTTCG 8048 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| || ||||| ||||| | ||||||||| | |||| | ||||| ||| || Sbjct 8047 AGTTGCTTCCCTGCGAAGATCAGCCTCTGTTGGTCTGGTGGAATACCTTCCTTATCC-TG 7989 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || |||| || | | ||||| | ||| || || | || || || || Sbjct 7988 AATCTTGGCTTTGACATTTTCAATGGTGTCTGATGCCTCTACTTCAAGGGTGATTGTCTT 7929 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 7928 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 7899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || ||||| ||||| || ||||||||||| || || || || || || | | | || Sbjct 8338 AATACCAGGTGCAGGGTAGATTCCTTCTGAATATTGTAATCAGATAGAGTTCTCCCATCT 8279 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTC 41769 ||||| || ||||| || || ||||| | ||| || || | |||| | || ||||| || Sbjct 8278 TCGAGTTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGTGGGATCCCT-TCCTTATC 8220 Query 41770 CATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 | ||| |||| | ||||| | | || || | ||| || |||| || || | Sbjct 8219 C-TGAATTTTCGCCTTCACATTCTCAATTGTATCAGATGCCTCTACTTCCAATGTGATGG 8161 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || ||||| ||||| |||||||| Sbjct 8160 TTTTACCAGTTAGTGTCTTAACGAATATCTGCAT 8127 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||| || || || ||||| || || ||||| || || ||||| | || || Sbjct 9305 CACCAAATGTAGTGTAGATTCTTTCTGGATATTGTAGTCTGAAAGAGTGCGGCCATCCTC 9246 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 || || ||||| || || |||| | ||| ||||| | || | || ||||| || | Sbjct 9245 AAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCT-T 9187 Query 41773 GATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || ||||||||| || || |||||| | || ||||| | ||||| |||| Sbjct 9186 GAATTTTTGCTTTTACATTCTCAATAGTGTCAGATGCTTCAACCTCTAATGTTATGGTTT 9127 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || || ||||| |||||||||||| Sbjct 9126 TCCCTGTAAGAGTTTTTACAAAAATCTGCATG 9095 >seq1287555 Length=382 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| |||||||| |||||||| |||||| || |||||||||||| Sbjct 210 CCACCACGAAGACGCAACACCAGGTGCAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 269 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||| || || ||||| || ||||| ||||||| |||||||||||| |||| Sbjct 270 AGCAGGCGGGAATCTTCTAGCTGTTTCCCGGCAAATATCAAGCGCTGTTGGTCGACGGG 328 >seq1341392 Length=603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || || |||||||||||||| || || || || || || | || ||| Sbjct 489 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGACAGTGTACGACCATCTTCG 430 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| || ||||| ||||| | |||||| || | |||| || ||||| ||| || Sbjct 429 AGTTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCTGGTGGAATGCCTTCCTTATCC-TG 371 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | || | | |||||| | || || |||| ||||| || || Sbjct 370 AATCTTCGCCTTGACATTTTCTATAGTGTCTGAGGCTTCAACTTCCAATGTTATGGTCTT 311 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||||||| || |||||||| Sbjct 310 GCCTGTGAGGGTCTTTACAAATATCTGCAT 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454228173230400