Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27] 143,665 sequences; 3,262,478,678 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq454 224 7e-54 seq19790 196 3e-45 seq11854 129 4e-25 seq24361 122 6e-23 >seq454 Length=212681 Score = 224 bits (248), Expect = 7e-54 Identities = 327/457 (72%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 101643 TTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACAT 101702 ||||||| | |||||| ||| || | |||| || | | ||||||||| | || || Sbjct 93068 TTGGAAATGCTCTAGGCTTTCTAGTTATCTGCTCCTTCAATGTATCAATGTGGTTTAAAT 93009 Query 101703 AGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAG 101762 | ||||||||||| |||| || |||| ||| |||||||| || | ||||||||| | Sbjct 93008 ATATGTGAGCATCCCCTAATGTGTGGACAAAATCTCCAGGTTTGAGGTCAGTGACATGTG 92949 Query 101763 CAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATAT 101822 | |||||| || ||||| | ||||||||||||||||||||| || ||||| ||||||| Sbjct 92948 CGATCATGTGTGTCAAAAGGGCATAGCTAGCAATGTTAAATGGTACACCTAAACCCATAT 92889 Query 101823 CAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTA 101882 | | || ||||| |||| |||||| || || | |||| || |||||||| || || Sbjct 92888 CGCCAGACCTTTGGTACAATTGACATGATAGTTCGCCATTACTCACATAAAACTGGGCTA 92829 Query 101883 ATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATT 101941 | ||| |||||||| || | |||||||| || || || | ||||||| ||||| Sbjct 92828 A-ACAGTGACAAGGGGGGAGAACCATTTTGGGTATATCAAGTGCGTTCCAAGAACACAAA 92770 Query 101942 AACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCA 102001 | || |||| ||| |||| ||| || || | | ||||| | | || || ||| Sbjct 92769 ATTATTCTTCGATCATTAGGATTTTCCTTGATGGCCTTAATCACATTTGCCAACTGATCA 92710 Query 102002 ACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCA 102060 ||||||| ||| | || || || | | | ||| | || || ||||| | ||| Sbjct 92709 ACTCCTTGACCTGTGTAGTCTGCTTTC-ATATGAGAATACTGAGCCCCAAAATGTCGCCA 92651 Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 |||||| |||||||| || || ||||| ||||| ||| Sbjct 92650 CTGAAACCCATACACTGGACCTAGATCACCTTCTTCT 92614 >seq19790 Length=54031 Score = 196 bits (216), Expect = 3e-45 Identities = 264/365 (72%), Gaps = 2/365 (1%) Strand=Plus/Minus Query 101645 GGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAG 101704 ||||| | |||||| ||| | | |||| || | |||||||| || | | ||| Sbjct 16840 GGAAATGCTCTAGGCTTTCTACTTATCTGCTCCTTCAATGCATCAATATGGTTCAGATAT 16781 Query 101705 ATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCA 101764 ||||||||||||||||| ||||||| ||| |||||||| || ||||||||||| || Sbjct 16780 ATGTGAGCATCTCCTATTGTATGGACAAAATCTCCAGGTTTGAGGTTAGTGACATGTGCG 16721 Query 101765 ATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCA 101824 |||||| || ||||| | |||||||||||||||||||||||| ||| | ||||||||| Sbjct 16720 ATCATGTGTGTCAAAAGGGCATAGCTAGCAATGTTAAATGGCACACCTCAACCCATATCA 16661 Query 101825 GCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAAT 101884 || | ||| | |||| |||||| || || | || | || |||||||| || ||| Sbjct 16660 GCATACCTTAGGTACATTTGACATGATAGTTCGCCGTTACTCACATAAAACTGGGCTAA- 16602 Query 101885 ACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAA 101943 ||| | || ||| || | ||||||| || || || | ||||||||| |||| | Sbjct 16601 ACAGTTACTAGGTGGAAGAGCCATTTTTGGTATATCAAGAGCATTCCAAGAGCACAAAAT 16542 Query 101944 CATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAAC 102003 ||| |||| ||| |||| ||| || || || | ||||| | | || || ||||| Sbjct 16541 CATTCTTCGATCACTAGGATTTTCCTTGATGGTCTTAATCACATTTGCCAACTGATCAAC 16482 Query 102004 TCCTT 102008 |||| Sbjct 16481 ACCTT 16477 >seq11854 Length=91893 Score = 129 bits (142), Expect = 4e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 101643 TTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACAT 101702 |||| || | |||||| ||| || | |||| || | |||||||| || | || || Sbjct 47227 TTGGGAATGCTCTAGGCTTTCTAGTTATCTGCTCCTTCAATGCATCAATATGGTTTAAAT 47168 Query 101703 AGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAG 101762 | ||||||||||| ||||| ||||||| ||| |||||||| || | ||||||||| | Sbjct 47167 ATATGTGAGCATCCCCTATTGTATGGACAAAATCTCCAGGTTTGAGGTCAGTGACATGTG 47108 Query 101763 CAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 | |||||| || ||||| | |||||||||||||||||||||||| || Sbjct 47107 CGATCATGTGTGTCAAAAGGGCATAGCTAGCAATGTTAAATGGCACACC 47059 >seq24361 Length=41355 Score = 122 bits (134), Expect = 6e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 101684 GCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGC 101743 ||||||| ||| | | ||| ||||||||||| ||||| ||||||| ||| ||||| || Sbjct 13595 GCATCAACGTGGTTCAGATATATGTGAGCATCGCCTATTGTATGGACAAAATCTCCCGGT 13536 Query 101744 ACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAAT 101803 || | ||||||||| ||||||||| || | ||| | ||||||||||||||||||| Sbjct 13535 TTGAGGTCAGTGACATGTGCAATCATGTGTGTCAGAAGGGCATAGCTAGCAATGTTAAAT 13476 Query 101804 GGCACTCCTAACCCC 101818 ||||| ||||| ||| Sbjct 13475 GGCACACCTAAACCC 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360618679064915