Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27] 143,665 sequences; 3,262,478,678 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq56889 107 2e-18 seq1004 87.8 1e-12 seq8227 82.4 6e-11 >seq56889 Length=12386 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || || ||||| || || || ||||| | || || ||| | || Sbjct 5831 CATGCAGATTTTTGTCAAGACTTTAACAGGGAAGACCATAACACTTGAAGTGGAACCCAG 5772 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 || | | |||| ||| |||| ||||||| | ||||| ||| | || ||||| Sbjct 5771 TGATACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAAGAGGGCATTCCCCCAGACCA 5712 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||| | || | ||| || || ||||| |||||| | || || ||| |||| Sbjct 5711 GCAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGCCGAACCCTGTCCGACTACAA 5652 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| |||| | ||| | ||| | || ||| | |||||| Sbjct 5651 TATCCAGAAAGAGTCCACATTGCATCTTGTGCTGCGGTTGAGAGGAGGT 5603 >seq1004 Length=176236 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| | ||||| ||||| || || ||||||||||| || |||| | ||| || Sbjct 108718 ATGCAATTTTTTGTGAAAACATTGACAGGCAAAACGATCACGATCGAAGCTGAACAGACA 108777 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | |||| || || |||||| | |||||||| ||||| || || Sbjct 108778 GACACTATAAAGTCTGTAAAAGAGAAAATTCAAGATAAAGAAGGTATACCGCCAGATCAA 108837 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACT--ATGAACGATTACA 25009 || || || || | |||||| || |||||||| || | || || ||| ||| |||| Sbjct 108838 CAGCGGTTGATTTTTGCGGGAAAGCAACTGGAGGA--CGATCGCTCGCTGAGCGACTACA 108895 Query 25010 GCATACAGAAAGAGGCCACGCTTCAT 25035 || ||||||||| ||| || ||| Sbjct 108896 ATATTCAGAAAGAGAGCACCCTCCAT 108921 >seq8227 Length=99420 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| | ||||| ||||| || || ||||||||||| || |||| | || | Sbjct 16957 ATGCAATTTTTTGTGAAAACATTGACAGGCAAAACGATCACGATCGACGCTGAGCCCGCA 17016 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| || | | || || || |||||| | |||||||| |||| || || Sbjct 17017 GACATCATAAAGTCCGTGAAAGAGAAAATTCAAGACAAAGAAGGTATACCTCCAGATCAA 17076 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 ||||| ||||| | ||||| || |||||||| | || || || |||||||||||| Sbjct 17077 CAACGGTTAATCTTTGCGGAGAAGCAACTGGAGGGCGATCAAT--CTTTGAACGATTACA 17134 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||||||||| || || |||||||| Sbjct 17135 ATATTCAGAAAGAGAGTACACTCCATTTAGT 17165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417571584336800