Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27] 143,665 sequences; 3,262,478,678 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq123699 89.7 1e-13 seq35759 89.7 1e-13 seq80806 82.4 1e-11 seq13964 82.4 1e-11 >seq123699 Length=2420 Score = 89.7 bits (98), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTT 4533 || ||||| ||| ||||||||||| |||||||| ||||||||| | ||||| | Sbjct 297 AAGAATAACTATATTATTCACTATCGCAATTTGAAGCAATGTTTAAACTTAGG-GAGGAA 239 Query 4534 CTTAAGAAAA-TACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATAT 4592 ||||||||| | |||| | | | || |||| || ||| | ||| ||||||| Sbjct 238 GTTAAGAAAAGTCCACCGCGCACTTCACTTCAAGCAGGCATCATGGTTAAAACCATATAT 179 Query 4593 CGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAA 4652 ||| ||||| | |||| || || |||| ||| ||||| |||||| || Sbjct 178 AGATTTCAATACTGAGCAAAGAAAGAATGCCAAAAATGGGTTTGAAAAGGACTTTTTCAA 119 Query 4653 ATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 | | ||||||||| | |||| ||| ||||| ||||| ||| | || || Sbjct 118 ACTCATGAATAATTCTGTTTATGGGAAGACCATGGAAAATCTCCGGAA 71 >seq35759 Length=24802 Score = 89.7 bits (98), Expect = 1e-13 Identities = 167/243 (69%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 4460 CAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAG 4519 ||| |||| | | || ||||| ||| ||||||||||| ||||| || ||||||||| Sbjct 6489 CAAATCTGAATCAGAAGAATAACTATATTATTCACTATCTCAATTTAAAGCAATGTTTAA 6430 Query 4520 ATTTAGG--TTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577 | ||||| | |||| || ||| | |||| | | || || |||| || || Sbjct 6429 ACTTAGGAATGAAGTT-AGAAAAAAGTCCACCGTGCACTTAACTTCAAGCAGGCATCATG 6371 Query 4578 GCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGa 4637 | | ||| ||||||| ||| ||||| | | |||| || || |||| || || Sbjct 6370 GTTAAAACCATATATAGATTTCAATACTGAACAAAGAAAGAATGCCAAAAATGGATTTGA 6311 Query 4638 aaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACG 4697 ||| |||||| ||| | ||||||||| | || | ||||||||| ||||| ||| | || Sbjct 6310 AAAGGACTTTTTCAAACTCATGAATAATTCTGTATATGGAAAGACTATGGAAAATCTCCG 6251 Query 4698 AAA 4700 || Sbjct 6250 GAA 6248 >seq80806 Length=6184 Score = 82.4 bits (90), Expect = 1e-11 Identities = 146/206 (71%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 4490 TTCACTATAAAAATTTGAAACAATGT-TTAGATTTAGGTTTAGTTCTTAAGAAAATACAC 4548 |||| |||| |||||||| |||||| || || |||| | |||| || ||||| ||| Sbjct 3480 TTCATTATAGGAATTTGAAGCAATGTCTTCGAGAAGGGTTGA-TTCTGAAAAAAATTCAC 3422 Query 4549 CTAGTCTTGAAATTTGAGCAATCAGAC--TGGCTCAAATCATATATCGATAAAAATACCG 4606 ||| ||||||||||||| || | ||||| || | |||| ||| || || | Sbjct 3421 AGAGTTCTGAAATTTGAGCAG--AGTCCTTGGCTAAAGCCCTATACTGATTTGAACACAG 3364 Query 4607 CATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAA-T 4665 || || ||| || ||| | || ||||| | ||||||||||| |||||||| Sbjct 3363 CAAAGCGGGCTAAAGCGAATAATCAATTTGAAAAGAGATTTTATAAATTGATGAATAACA 3304 Query 4666 GCGGTTTTTGGAAAGACGATGGAGAA 4691 ||| |||||| ||| || |||||||| Sbjct 3303 GCGTTTTTTGTAAA-ACTATGGAGAA 3279 >seq13964 Length=47905 Score = 82.4 bits (90), Expect = 1e-11 Identities = 163/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 4459 ACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGT-TT 4517 || || ||||| ||||| | ||||||| |||| | || ||| |||| |||||| || Sbjct 31049 ACCACACTGTATGATAAGAGAAATTATGACCTTCATTGTAGGAATCTGAAGCAATGTCTT 31108 Query 4518 AGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGAC-- 4575 || |||| | || | | ||||| ||| |||| ||||||| ||||| || | Sbjct 31109 CGAGAAGGGTTGATTT-TGAGAAAAATTCAC--AGTCCTGAAATTCGAGCAG--AGTCCT 31163 Query 4576 TGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTC 4635 ||||| || | ||||| ||| || || ||| ||| ||| || ||| | || Sbjct 31164 TGGCTAAAGCCTTATATTGATTTGAACACAGCAAAGCGAGCTGAAGCGAATAATAAATTT 31223 Query 4636 GaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAA 4691 |||||| || ||||| || |||||||| ||||||||||| || |||||||| Sbjct 31224 GAAAAAGGATTATATAAGTTGATGAATAACAGCGTTTTTGGAAAAACTATGGAGAA 31279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97807253530410