Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27]
143,665 sequences; 3,262,478,678 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1004 114 2e-20
seq15708 100 5e-16
seq52744 91.5 2e-13
seq7405 89.7 8e-13
seq28800 86.0 1e-11
seq16152 84.2 3e-11
>seq1004
Length=176236
Score = 114 bits (126), Expect = 2e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 203845 CACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTT 203904
||| || ||||| ||||||| | || || || | | || ||||||||||| |||||
Sbjct 32114 CACGGTAAACTGCTCGGCGTTCGCTGCCGGTTTGTTCCGGAGGTAGTACATGCCCGTCTT 32055
Query 203905 TAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGC 203964
|| ||| || ||| ||||| | ||||||| | ||||||| || | || || ||
Sbjct 32054 GAGTCCCAACTTCCAACCGTAAAAGTGCATGCTCGTCAGTTTGGCTTCGCTCGGATCTGC 31995
Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATT 204024
||||| ||||||| ||||| || || ||||| || || | ||||| || ||||| ||
Sbjct 31994 CATGTACATGTTCATCGACTGACTCTGATCGATAAATGGACCGCGATCGGCCGCCATCTT 31935
Query 204025 GATAATGGTCTTCTGCGAAATCTCCCACACCGT 204057
| | ||||| |||| ||| |||||||| ||
Sbjct 31934 CAGTAGCGTCTTTTGCGGAATTTCCCACACGGT 31902
>seq15708
Length=44177
Score = 100 bits (110), Expect = 5e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 203860 GGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCA 203919
||| ||| | || || |||| | || ||||||||||| ||||| || || || |||
Sbjct 33807 GGCATTCGCCGCCGGTTTGCTCCGGAGGTAGTACATGCCCGTCTTGAGTCCTAACTTCCA 33866
Query 203920 CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAG 203979
||||| | ||||||| | ||||||| || | || || ||||||| | |||||
Sbjct 33867 ACCGTAAAAGTGCATGCTCGTCAGTTTGGCTTCGCTCGGATCCGCCATGTACACGTTCAT 33926
Query 203980 AGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTG 204039
||||| || || ||||| || || | ||||| || ||||| || | | ||||| ||
Sbjct 33927 CGACTGACTCTGATCGATAAATGGACCGCGATCGGCCGCCATCTTCAGCAGCGTCTTTTG 33986
Query 204040 CGAAATCTCCCACACCGT 204057
|| ||| |||||||| ||
Sbjct 33987 CGGAATTTCCCACACGGT 34004
>seq52744
Length=12040
Score = 91.5 bits (100), Expect = 2e-13
Identities = 126/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944
|| ||||||||||| ||||| || || || ||| ||||| | |||||| | ||||
Sbjct 3283 AGGTAGTACATGCCCGTCTTCAGTCCTAACTTCCAACCGTAAAAATGCATGCTCGTCAGT 3342
Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004
||| || | || || ||||||| | ||||| || || ||||| || || ||| ||
Sbjct 3343 TTGGCTTCGCTCGGCTCCGCCATGTACACGTTCATCGATTGACTTTGATCAAT-AAAAGC 3401
Query 204005 GCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGT 204057
||| ||||| || ||||| || | | ||||| |||| ||| |||||||| ||
Sbjct 3402 GCCACGATCGGCTGCCATTTTCAACAGCGTCTTTTGCGGAATTTCCCACACAGT 3455
>seq7405
Length=74570
Score = 89.7 bits (98), Expect = 8e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 203845 CACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTT 203904
||| || ||||| | | |||| | || || |||| | || ||||||||||| |||||
Sbjct 57506 CACGGTAAACTGCACTGTGTTCGCTGCCGGTTTGCTCCGGAGGTAGTACATGCCCGTCTT 57565
Query 203905 TAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGC 203964
|| ||| || ||| ||||| | ||||||| | || |||| | | || || ||
Sbjct 57566 GAGTCCCAACTTCCAACCGTAAAAGTGCATGTTCGTCAATTTGGCTTCTCTCGGATCCGC 57625
Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATAT 204023
||| | | ||||| ||||| || || ||||| ||| ||||| ||||| || ||||| |
Sbjct 57626 CATTTACACGTTCATCGACTGACTCTGATCGAT-AAAAGCGCCGCGATCGGCTGCCATCT 57684
Query 204024 TGATAATGGTCTTCTGCGAAATCTCCCACAC 204054
| | | || || |||| ||| || |||||
Sbjct 57685 TCAGTAGCGTTTTTTGCGGAATTTCTCACAC 57715
>seq28800
Length=31993
Score = 86.0 bits (94), Expect = 1e-11
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 203845 CACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTT 203904
||| || ||||| | ||||||||| || | |||| | | ||||||||||| ||||
Sbjct 5634 CACGGTAAACTGCAAGGCGTTCACTGCCGATTTGCTGCAGATGTAGTACATGCCCGTCTC 5693
Query 203905 TAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGC 203964
||| || | ||| ||||| ||||||||| | |||||| || | || || |
Sbjct 5694 TAGTCCTAACGCCCAACCGTAAATGTGCATGCTCGTTAGTTTGGCTTCGCTCGGATCCTC 5753
Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATAT 204023
||||| | ||||| ||||| || || ||||| ||| ||||| |||| || ||||| |
Sbjct 5754 CATGTACACGTTCATCGACTGACTCTGATCGAT-AAAAGCGCCGCGATTGGCCGCCATTT 5812
Query 204024 TGATAATGGTCTTCTGCGAAATCTCCCACAC 204054
| | | ||||| || | | ||||||||
Sbjct 5813 TCAACAGCGTCTTTTGTGGCGTTTCCCACAC 5843
>seq16152
Length=64332
Score = 84.2 bits (92), Expect = 3e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 203877 TGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGG 203936
|||| | || ||||||||||| ||||| || || | ||| ||||| | |||||||
Sbjct 47427 TGCTGCGGAGGTAGTACATGCCCGTCTTCAGTCCTAACGCCCAACCGTAAAAGTGCATGC 47368
Query 203937 AAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGA 203996
| ||||||| || | | || ||||||| | ||||| ||||| || || || |
Sbjct 47367 CCGTCAGTTTGGCTTCGCTCAGATCCGCCATGTACACGTTCATCGACTGACTCTGATCAA 47308
Query 203997 TGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCG 204056
| |||| | |||||||| ||||| || | || ||||| |||| ||| || | ||| |
Sbjct 47307 TAAAAGCACCACGATCTGCCGCCATTTTCAAAAGCGTCTTTTGCGGAATTTCTCGCACGG 47248
Query 204057 T 204057
|
Sbjct 47247 T 47247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 793727250352400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |