Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27] 143,665 sequences; 3,262,478,678 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5901 140 5e-27 seq72566 91.5 2e-12 >seq5901 Length=104132 Score = 140 bits (154), Expect = 5e-27 Identities = 293/431 (68%), Gaps = 8/431 (2%) Strand=Plus/Minus Query 1455882 CATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAA 1455941 |||||||| || ||| | ||||| ||| ||||||||||| |||||||| ||| || Sbjct 21234 CATTTCATTGCCCAAGTCTTAGCCTTCTTT-GCCGCCAGCGACGGCATCGTCAACGAAAA 21176 Query 1455942 CCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTT 1456001 | || || || | || ||||| || || || || || | |||||||| || Sbjct 21175 TTTACTCGCGCGGTTCGGTCAGGAAGTCCAGTTACCCGAAGCGCGATGCTTTTACGGATT 21116 Query 1456002 CCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGT 1456061 || || ||||| |||||||| || || |||| ||| | || |||||||| ||| | Sbjct 21115 TCAAATTGCCATGGAAAACATTCATTCAGAAATGTACAGCTTGCTCATCGACACGTACAT 21056 Query 1456062 CAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAG 1456121 | || ||| |||| || |||| ||| |||||| || ||| | || | || | Sbjct 21055 TACCGATCCGAAACAGAAAAACGACCTGTTTGACGCCATTGAAACGTTCCCCTGCGTTCG 20996 Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 || ||||| || ||||| | || ||||| || | |||| | || || || Sbjct 20995 AAAGAAGGCAGAATGGGCTCTCAACTGGATTC----GGCCCGACTCGTCCCTCGGC-GAA 20941 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240 || || ||| || ||| || || ||| | || |||||||| ||| |||||| Sbjct 20940 CGTCTGCTCGCTTTCGCCATAGTGGAAGGCGTGTTCTTCTCGGGATCGTTCGCAGCCATC 20881 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300 || |||||||||||| | || || |||||||| || || |||||||| || ||||| Sbjct 20880 TTCTGGCTCAAGAAGAGAGGGCTGCTGCCCGGT-TTGACGTTCAGCAACGAGTTCATCAG 20822 Query 1456301 TCGCGACGAAG 1456311 ||| ||||||| Sbjct 20821 TCGAGACGAAG 20811 >seq72566 Length=7134 Score = 91.5 bits (100), Expect = 2e-12 Identities = 271/410 (66%), Gaps = 15/410 (4%) Strand=Plus/Plus Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 || ||||| |||||||| |||||||| || || | || ||| |||| |||| Sbjct 177 TTCTTCGCTGCCAGCGACGGCATCGTTAATGAAAATTTACTCGCCCGTTTTAGTCAAGAA 236 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 | ||| | || || || || | ||||||||||| || || ||||| || ||||| || Sbjct 237 ATTCAACTACCCGAAGCGCGATGCTTTTACGGGTTTCAAATAGCCATGGAGAACATTCAT 296 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || |||| ||| | || || ||||| ||| ||| || || || | || || Sbjct 297 TCAGAAATGTACAGTTTGCTCATTGACACATACATCACTGATCCAAAACAGTAATACAAC 356 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 | ||| ||||||||| ||| | || | || | || || || || ||||| |||| Sbjct 357 TTGTTTGACGCCATCGAAACGTTCCCCTGCGTTCGAAAGAAAGCAGAGTGGGCTTTGAAT 416 Query 1456147 TGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC----G 1456202 ||||| | ||| ||| | | | | || ||| | | ||||| ||| | Sbjct 417 TGGATTCGCTCCGAG----TCG-CCCCTCGGTGAACGG-TTGCTTGCTTT--CGCTATAG 468 Query 1456203 TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGC 1456261 | || || | || || ||||| | | ||| ||||| |||||||||||||| | || Sbjct 469 TGGAAGGTGTTTTCTTTTCGGG-ATCGTTTGCAGCCATTTTTTGGCTCAAGAAAAGAGGA 527 Query 1456262 CTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | | |||||| || || ||||||||| | |||||||| ||||||| Sbjct 528 TTGCTCCCCGGT-TTAACGTTCAGCAACGAACTCATCAGTCGAGACGAAG 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7163954446693730