Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27] 143,665 sequences; 3,262,478,678 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq17656 104 2e-17 seq1004 104 2e-17 seq454 104 2e-17 seq23149 96.9 2e-15 seq22141 87.8 1e-12 seq56889 86.0 4e-12 seq9166 84.2 2e-11 >seq17656 Length=61091 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||| ||||||||||||| | || || ||| || || || || | || || Sbjct 9090 ATGCAATTTTTTGTGAAAACATTGACAGGCAAAACGATCACGATCGAAGCTGAGCTAACA 9149 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || | || || ||| | ||||| || ||||||||| | ||| || || Sbjct 9150 GACACTATAAAGTCTGTAAAAGAGAAAATTCAAGATAAAGAAGGTATACCGCCAGATCAA 9209 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || ||||| |||||||| ||||| ||| |||| ||||| ||| ||| ||| ||||| Sbjct 9210 CAGCGGTTGATTTTTGCGGGAAAGCAACTGGAGGACGATCGCTCGTTGAGCGACTACAAT 9269 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||||||||| | ||| | || |||| | || ||||| Sbjct 9270 ATTCAGAAAGAGAGCACCCTCCATCTCGTCCTGCGGCTTCGAGGCGG 9316 >seq1004 Length=176236 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||| ||||||||||||| | || || ||| || || || || | ||| || Sbjct 108718 ATGCAATTTTTTGTGAAAACATTGACAGGCAAAACGATCACGATCGAAGCTGAACAGACA 108777 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || | || || ||| | ||||| || ||||||||| | ||| || || Sbjct 108778 GACACTATAAAGTCTGTAAAAGAGAAAATTCAAGATAAAGAAGGTATACCGCCAGATCAA 108837 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || ||||| |||||||| ||||| ||| |||| ||||| ||| || ||| ||||| Sbjct 108838 CAGCGGTTGATTTTTGCGGGAAAGCAACTGGAGGACGATCGCTCGCTGAGCGACTACAAT 108897 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||||||||| | ||| | || |||| | || ||||| Sbjct 108898 ATTCAGAAAGAGAGCACCCTCCATCTCGTCCTGCGGCTTCGAGGCGG 108944 >seq454 Length=212681 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||| ||||||||||||| | || || ||| || || ||||| | || || Sbjct 116711 ATGCAATTTTTTGTGAAAACATTGACAGGCAAAACGATCACGATTGACGCTGAGCAGACA 116652 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || | || || ||| | ||||| || ||||||| | | ||| || || Sbjct 116651 GACACTATAAAGTCTGTAAAAGAGAAAATTCAGGATAAAGAAGATATACCGCCAGATCAA 116592 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || ||||| |||||||| ||||| ||| |||| ||||| || ||| ||||||||| Sbjct 116591 CAGCGGTTGATTTTTGCGGGAAAGCAACTGGAGGACGATCGTTCGTTGAGCGATTACAAT 116532 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||||||| | ||| | || |||| | || ||||| Sbjct 116531 ACTCAGAAAGAGAGCACTCTCCATCTCGTCCTGCGACTTCGAGGCGG 116485 >seq23149 Length=43904 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||| | |||||||||||| | | ||| ||| || || || ||||| || || Sbjct 20063 ATGCAATTATTTGTGAAAACTTTGAATGGAAAAACAATCACTATCGATGTTCAA----CC 20008 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || || | | | || ||| || |||| ||||||||||| |||| || ||| Sbjct 20007 AACTATTGAAAGT--GTTAAAAAACAAATTCAAGACAAAGAAGGAATTCCACCCGATCAG 19950 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 |||||| | |||||||| || ||||| ||||| || || | | || |||||| || Sbjct 19949 CAACGGCTTATTTTTGCTGGCAAACAGTTGGAGGATGATAGGATATTAAGCGATTATAAT 19890 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || |||||||| | |||||| ||| | |||||| Sbjct 19889 ATTCAAAAAGAAAACACTTTACATCTTGTTTTG 19857 >seq22141 Length=76464 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTT-TGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||| ||||||||| | || | ||| || || || || | || || Sbjct 26530 ATGCAATTTTTTTGTGAAAACGTTGACAGACAAAACGATCACGATCGACGCTGAGCTGAC 26589 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | || |||| || ||| | ||||| || ||||||||| | ||| || || Sbjct 26590 AGACACTATAAAATCTGTGAAAGAGAAAATTCAGGATAAAGAAGGTATACCGTCAGATCA 26649 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 || |||||||| ||||| || || ||| |||| ||||| || ||| ||| ||||| Sbjct 26650 ACAGCGGTTAATCTTTGCGGGGAAGCAACTGGAGGACGATCGTTCTTTGAGCGACTACAA 26709 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||||||||| | ||| | || |||| | || ||||| Sbjct 26710 TATTCAGAAAGAGAGCACACTCCATCTCGTACTGCGGCTTCGAGGCGG 26757 >seq56889 Length=12386 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || || || || || || ||| |||| || ||| || Sbjct 6286 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACACTTGAAGTGGAACCCAGT 6227 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || || || |||||| |||||||||||| | || || ||| Sbjct 6226 GACACCATTGAAAACGTAAAGGCAAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAG 6167 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTACAA 27968 || || ||||||||||| || ||||| |||| || | |||| |||| || |||||||| Sbjct 6166 CAGCGTTTAATTTTTGCTGGCAAACAGCTGGAAGATGGCCGCACGCTT-TCAGATTACAA 6108 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||||| ||||| || | ||| |||| ||||| Sbjct 6107 CATCCAGAAAGAATCTACCCTACATCTGGTCTTGCG 6072 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||| ||||||| |||||||||||| |||| || |||||||| | |||||| Sbjct 3118 GTGAAAGCAAAAATACAAGACAAAGAAGGTATTCCTCCAGACCAGCAACGTCTTATTTTT 3059 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || || || || || || | || | |||| || |||||||| || ||||| | Sbjct 3058 GCAGGCAAGCAGTTAGAAGATGGCCGAACACTGTCAGACTACAACATACAGAAAGAATCC 2999 Query 27985 ACTTTGCATTTGGTTTTG 28002 || ||||| ||||||||| Sbjct 2998 ACATTGCACTTGGTTTTG 2981 >seq9166 Length=72308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||| | |||||||||||| | | ||||||| |||||||||||||| || || Sbjct 29668 ATGCAATTATTTGTGAAAACTTTAAGTGGGAAAACAATTACAATTGATGTTGACCCGACA 29609 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| | | ||| || |||| || |||||||| |||| || | Sbjct 29608 GACACCAT-TGAAATTGTTAAAAAAACAAATTCAAGATAAAGAAGGAATTCCACCTGAAC 29550 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA 27944 |||| || | ||||||||||| ||||||||||| || Sbjct 29549 AGCAGCGACTTATTTTTGCCGGCAAACAATTGGAGGA 29513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355239314407455