Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27]
143,665 sequences; 3,262,478,678 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq56889 100 3e-16
>seq56889
Length=12386
Score = 100 bits (110), Expect = 3e-16
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||| ||||||| ||| ||| ||||| || || |||||||| ||||| || | || ||
Sbjct 5621 CACAAGATGCAATGTGGACTCTTTCTGGATATTGTAGTCGGACAGGGTTCGGCCATCTTC 5680
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
|| ||||| || || || || || || || ||||| | ||||| || ||| |||||| |
Sbjct 5681 AAGTTGCTTACCAGCAAAAATAAGACGTTGCTGGTCTGGGGGAATGCCCTCTTTGTCC-T 5739
Query 41773 GATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
|| ||||||| | || || || || || | ||||| || | ||||| || |
Sbjct 5740 GAATTTTTGCCTTGACATTTTCAATTGTATCACTGGGTTCCACTTCAAGTGTTATGGTCT 5799
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| || || | ||||| || ||||||||||||
Sbjct 5800 TCCCTGTTAAAGTCTTGACAAAAATCTGCATG 5831
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| | || | ||||| |||||||| || || || |||||||||||||| ||
Sbjct 5831 GCCGCCTCTAAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGAATGTTATAGTCCGA 5890
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || | || || | |||||| || || || ||||| ||||| ||||| | ||
Sbjct 5891 AAGGGTACGACCATCTTCTAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGG 5950
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| | || ||||| ||| ||| ||| || || | |||||| || | ||
Sbjct 5951 GATACCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCG--ATAGTGTCACTTGGTTCA 6008
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || | || || ||||| || |||| ||||| || ||||||||||||
Sbjct 6009 ACTTCAAGAGTGATTGTTTTCCCAGTCAATGTCTTAACAAAAATCTGCATG 6059
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 41678 TGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGG 41737
|| ||||||||||| || | || | | || || | |||||| || || || || ||
Sbjct 5418 TGGATGTTATAGTCCGACAAAGTCCTGCCATCCTCTAACTGCTTACCAGCAAAGATAAGA 5477
Query 41738 CGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACAC 41796
||||||||||| | ||||| || || |||||| ||| ||||||| | ||| | |
Sbjct 5478 CGCTGTTGGTCTGGGGGAATGCCTTCTTTGTCC-TGAATTTTTGCCTTGACGTTCTCTAT 5536
Query 41797 AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856
|| || || ||||| || |||| || || || || || |||| ||||| || |||||
Sbjct 5537 TGTATCACTTGACTCAACATCCAAGGTAATTGTCTTCCCAGTCAATGTCTTCACAAAAAT 5596
Query 41857 CTGCAT 41862
||||||
Sbjct 5597 CTGCAT 5602
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710
||||| || |||| || || || |||||||||||||| || || || || | ||
Sbjct 6303 AACACAAGGTGCAAGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGAGTACGACCATCT 6362
Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
|| | |||||| || || || || || || || ||||| | |||| || ||||||||
Sbjct 6363 TCTAACTGCTTACCAGCAAAAATAAGACGTTGCTGGTCGGGTGGAATGCCTTCCTTGTCT 6422
Query 41771 ATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828
||| ||| ||| || || | |||||| || | || || || | || || |
Sbjct 6423 TGGATCTTTGCCTTGACATTTTCG--ATAGTGTCACTTGGTTCAACTTCAAGAGTGATTG 6480
Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| || |||| ||||| |||||||||||||||
Sbjct 6481 TTTTCCCAGTCAATGTCTTGACGAAAATCTGCATG 6515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461473788698000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |