Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxosceles_20reclusa_20[genbank_20GCA_5F001188405.1_202015-04-27] 143,665 sequences; 3,262,478,678 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq56889 100 3e-16 >seq56889 Length=12386 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||||| ||| ||| ||||| || || |||||||| ||||| || | || || Sbjct 5621 CACAAGATGCAATGTGGACTCTTTCTGGATATTGTAGTCGGACAGGGTTCGGCCATCTTC 5680 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 || ||||| || || || || || || || ||||| | ||||| || ||| |||||| | Sbjct 5681 AAGTTGCTTACCAGCAAAAATAAGACGTTGCTGGTCTGGGGGAATGCCCTCTTTGTCC-T 5739 Query 41773 GATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || ||||||| | || || || || || | ||||| || | ||||| || | Sbjct 5740 GAATTTTTGCCTTGACATTTTCAATTGTATCACTGGGTTCCACTTCAAGTGTTATGGTCT 5799 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || | ||||| || |||||||||||| Sbjct 5800 TCCCTGTTAAAGTCTTGACAAAAATCTGCATG 5831 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || | ||||| |||||||| || || || |||||||||||||| || Sbjct 5831 GCCGCCTCTAAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGAATGTTATAGTCCGA 5890 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || | |||||| || || || ||||| ||||| ||||| | || Sbjct 5891 AAGGGTACGACCATCTTCTAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGG 5950 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | || ||||| ||| ||| ||| || || | |||||| || | || Sbjct 5951 GATACCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCG--ATAGTGTCACTTGGTTCA 6008 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || ||||| || |||| ||||| || |||||||||||| Sbjct 6009 ACTTCAAGAGTGATTGTTTTCCCAGTCAATGTCTTAACAAAAATCTGCATG 6059 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 41678 TGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGG 41737 || ||||||||||| || | || | | || || | |||||| || || || || || Sbjct 5418 TGGATGTTATAGTCCGACAAAGTCCTGCCATCCTCTAACTGCTTACCAGCAAAGATAAGA 5477 Query 41738 CGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACAC 41796 ||||||||||| | ||||| || || |||||| ||| ||||||| | ||| | | Sbjct 5478 CGCTGTTGGTCTGGGGGAATGCCTTCTTTGTCC-TGAATTTTTGCCTTGACGTTCTCTAT 5536 Query 41797 AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856 || || || ||||| || |||| || || || || || |||| ||||| || ||||| Sbjct 5537 TGTATCACTTGACTCAACATCCAAGGTAATTGTCTTCCCAGTCAATGTCTTCACAAAAAT 5596 Query 41857 CTGCAT 41862 |||||| Sbjct 5597 CTGCAT 5602 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| || |||| || || || |||||||||||||| || || || || | || Sbjct 6303 AACACAAGGTGCAAGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGAGTACGACCATCT 6362 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | |||||| || || || || || || || ||||| | |||| || |||||||| Sbjct 6363 TCTAACTGCTTACCAGCAAAAATAAGACGTTGCTGGTCGGGTGGAATGCCTTCCTTGTCT 6422 Query 41771 ATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| ||| ||| || || | |||||| || | || || || | || || | Sbjct 6423 TGGATCTTTGCCTTGACATTTTCG--ATAGTGTCACTTGGTTCAACTTCAAGAGTGATTG 6480 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || |||| ||||| ||||||||||||||| Sbjct 6481 TTTTCCCAGTCAATGTCTTGACGAAAATCTGCATG 6515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461473788698000