Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq869 156 4e-33 seq1266 84.2 2e-11 >seq869 Length=1271022 Score = 156 bits (172), Expect = 4e-33 Identities = 413/624 (66%), Gaps = 20/624 (3%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || |||||||||||||||| ||||||||| || ||||| ||||| | | || Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 || | ||| || || | ||| || || || |||||||| | ||||| | Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATTTCAAT 484020 Query 16918 AACTCGTTC----CTCGGACGGTGTATGTTTAAGATGTTTAAACA-TCAGACATGCGAAA 16972 || || || || ||||| |||| | ||||||||||| | | ||| || ||| Sbjct 484019 AATTCTCTCTCGACTGGGACGTTGTACC----AAATGTTTAAACATTAATACA-GCAAAA 483965 Query 16973 TCGCAATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 || |||||||| ||||| || | || | || | || || || ||||| | || ||||| Sbjct 483964 TCACAATGTAAACCCTCATCACGTGAT-ATCAACTCATTGGAGAATGTAAGACCAGGCAT 483906 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 || |||||||||| |||||| || | || || ||| |||||| |||||||| Sbjct 483905 AAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCTC 483846 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || | ||||| || || | ||||| | | | || ||| | |||||| Sbjct 483845 TACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCGAAGAAATCCAAGC 483786 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA----ATA 17207 | |||| ||||| || |||| | ||| ||||| || || |||| ||| Sbjct 483785 CATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAGATA 483726 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 || | || || | | || | ||||| |||| || || | || |||||||| | Sbjct 483725 ATCACGCTGTTCAC----GATCCTTAATATAACTATCAATTAGAATACTATACATTTCAG 483670 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 |||||| || |||||||| || ||||| || || || || || || || | | ||| | Sbjct 483669 AGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTA 483610 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 |||| |||| ||||| | |||||||| || || ||||| ||| |||||||| | Sbjct 483609 CTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGA 483550 Query 17388 ACGCCAATATATGCTTAATGAAAT 17411 | || | | ||| |||||||| Sbjct 483549 AAGCAAGAACATGTGAAATGAAAT 483526 >seq1266 Length=2164085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 119936 TCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGC 119995 || |||| || ||||||| | ||||| |||||||| ||||| ||||| | |||||| Sbjct 369141 TCGGGAGATTCTGTCCATTCTAAGATTTTCTTAGCCCAATACATGCGTAAAAAGCCATGC 369082 Query 119996 ATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACG 120054 |||||||| ||| ||||| || ||||| || | |||||||| ||| || ||||| Sbjct 369081 ATTTTACCCTCATTAACCAGCTGCAGTTGCGCAGAATTCCATAAATCATCATGGGTACG 369023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534518054840