Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq253 192 4e-45 seq87 143 2e-30 >seq253 Length=360942 Score = 192 bits (212), Expect = 4e-45 Identities = 359/525 (68%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 2709 ATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGT 2768 |||||||||||| ||||||||||||| |||||| | || || | ||| || | | Sbjct 131976 ATCCAAATAATCGGCCCACCACTGCACCATTAAGTATCTTTCCTCAATATGTTCTGCCTT 131917 Query 2769 ATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGC 2828 || ||||| || || | || ||||| ||| |||||||| |||||| |||| || Sbjct 131916 GTGAATATAAGCAGCCCTCACTGAGTTACGTTCTTGGTGGCTCATTTGCCTTTCTACTGC 131857 Query 2829 GTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATG 2888 || | ||||| ||| ||||| ||||| || || |||||| || || || ||||| Sbjct 131856 ATCCTTCGACCATAGCCCTGACTCAATCAACGAACTACACGCCATTGTTCTGAAACCATG 131797 Query 2889 CCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTT 2948 |||||||| || || |||||||||||||||||| |||| ||||| ||||||| || || Sbjct 131796 TCCACACACTTCCGTCTTAGTATCATAGCCCATCACACGTAATGCATTGTTTACTGTATT 131737 Query 2949 TTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTTTATCACCACT 3008 |||||||| ||| | | | |||||| || ||| | ||| || | | || || Sbjct 131736 CTCACTCATGGGCTTTCTAGGATTATGATCACCGATAAAGATCAGTTCGTGGTTGCCGCT 131677 Query 3009 AATCTGCTTTAACTGGTTTAATAAAATCATCGCCTGTCGACTAAGCGGAACGATATG--- 3065 | || | | ||| ||||| | || || ||||| || | || || | ||| Sbjct 131676 GAATTGATAGATCTGTTTTAAGATCTCAATGGCTTGTCGGCTTAATGGGACTAAATGAGG 131617 Query 3066 -TTCCTCTTTCATCTTCATGCCTCGGTACGAATAACGCACACCTTTAATTTCTTCTCGCT 3124 | | | | | || || || || || || | || |||| || |||| || | Sbjct 131616 AGTACGCAT---TTTTGAT-CCACGATAAGAGTGCTTAACGCCTTCTATCGCTTCACGTT 131561 Query 3125 TTGCAGGTATACGCCAAAGAGATTTATCGAAGTCGAATTCATCCCAACGTGCGAAACGTA 3184 ||||| || ||| | | ||||| || |||| |||||||||||| || || |||| Sbjct 131560 CAGCAGGGATCGTCCACATGGCATTATCAAAATCGATTTCATCCCAACGAGCAAAGCGTA 131501 Query 3185 ATTCACTGGAACGCACAAAAGTTAGCAAGGAAAGCTTGACCGCAA 3229 ||||||| ||||| | || || ||||| ||| ||||| |||| Sbjct 131500 ATTCACTAGAACGAATGAAGACTAACAAGGTAAGTTTGACTGCAA 131456 >seq87 Length=489008 Score = 143 bits (158), Expect = 2e-30 Identities = 181/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 2709 ATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGT 2768 |||||||||||| ||||||||||||| |||||| || || | ||| | ||| || | | Sbjct 107649 ATCCAAATAATCCGCCCACCACTGCACCATTAATCGGCGTTGATCTATATGTTCTGCCTT 107708 Query 2769 ATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGC 2828 ||| ||||| || || | || ||||| ||| |||||||| |||||| |||| || Sbjct 107709 ATGAATATAAGCAGCCCTCACTAAGTTACGTTCTTGGTGGCTCATTTGCCTTTCTACTGC 107768 Query 2829 GTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATG 2888 || | |||||| || || || | || | || || |||||| || ||||| || || Sbjct 107769 ATCCTTCGACCATAAACCTGATTCAACTAATGAACTACACGCCATCGTTCTAAAACCGTG 107828 Query 2889 CCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTT 2948 ||||| | || || || |||||||||||||| | || || || | || || || || Sbjct 107829 TCCACAAATTTCAGTCTTCGTATCATAGCCCATGACGCGTAAGGCTTTATTGACTGTATT 107888 Query 2949 TTCACTCAT 2957 ||||||||| Sbjct 107889 TTCACTCAT 107897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37080885391216