Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1348 565 3e-156 seq869 297 2e-75 seq583 100 3e-16 >seq1348 Length=1847788 Score = 565 bits (626), Expect = 3e-156 Identities = 1501/2269 (66%), Gaps = 34/2269 (1%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 || |||||||| | | || || ||||| || | | ||| ||||| || || |||| Sbjct 1698168 GTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAG 1698227 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| | || ||||| || || | |||| ||| | || || || | | Sbjct 1698228 CCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACA 1698287 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | |||||||||||||| ||||| || || | ||| |||||||||| |||| Sbjct 1698288 TGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATG 1698347 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 53046 | ||||| | ||| ||||||| ||||| || | || | || ||| || || | Sbjct 1698348 GTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTA-TATGTTTGGGTAT 1698406 Query 53047 GT-TTGTATTC--TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 | || ||| || || || || | || ||||| |||| || || ||||||| Sbjct 1698407 TTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATC 1698466 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 |||||| | ||||||||| || |||| | ||| |||| || || | |||||||| Sbjct 1698467 CCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCC 1698526 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 ||||| || | | ||||||||||||| ||| |||||||| | || ||||| || || Sbjct 1698527 CGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCC 1698586 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 | |||||| || || || || || ||||| || || | | ||| ||| | | ||| Sbjct 1698587 TAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACC 1698646 Query 53284 GTATGTT--CTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341 ||||| |||||||| || || | | ||| ||||| | || | ||| Sbjct 1698647 --ATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTA 1698704 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 53400 |||||| ||||| ||||| | | || | || ||| || || || Sbjct 1698705 TTCCACATATCATATTGTAGTATACCCTTACTTACTGGAC-AGCCGGGATAAGTTTCATA 1698763 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 || || || || || || | ||||||||| || || || || || |||||||| ||||| Sbjct 1698764 TGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTC 1698823 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGGATAATTTAAGAGA 53518 ||| |||| | ||||| ||| || || || ||| | || ||| | | | Sbjct 1698824 GAAAATCTGTTGATTTAACAAAAATGCCTTTTCA--CTCTCATAGGGGTAACGCATTAAA 1698881 Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 53578 || || | || || || || |||||||| ||||| ||||| | ||| | | ||| || Sbjct 1698882 ATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGAC 1698941 Query 53579 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACA 53638 || |||||| || | |||||| | || || || || ||||| ||||| || || | Sbjct 1698942 TTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTA 1699001 Query 53639 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT-CTA---TTACAAA 53694 || ||||| |||| |||| ||| |||||||| ||| | || | ||||| Sbjct 1699002 ATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAG-GTCTTTTCTGGCGTGACAAA 1699060 Query 53695 CATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTG 53754 ||| || | ||||| || |||| ||||||||| |||| ||||| || | | ||||| Sbjct 1699061 CATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTC 1699120 Query 53755 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 53814 || ||||| ||||| | || || ||||| ||||| || | ||||| || || || || Sbjct 1699121 TACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTT 1699180 Query 53815 TTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTAT 53874 ||| || ||||| || || | || | || ||||| ||||||| || | ||| || Sbjct 1699181 GCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAAT 1699240 Query 53875 AATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGT 53933 || || ||| | | |||| || | | |||| | | || || || |||| | Sbjct 1699241 TATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTT-CTTTTTCAT 1699299 Query 53934 ATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 53993 | ||||||||| ||| ||||| || |||||||||| | || || ||||||| | Sbjct 1699300 ACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGT 1699359 Query 53994 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 54053 |||||||| | ||||| || || | || | ||| ||||||||||| | || || | Sbjct 1699360 GTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTA 1699419 Query 54054 TCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112 |||| ||||| ||| || |||||||||| |||||| || || || || ||||| || || Sbjct 1699420 TCCACAGAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTT 1699478 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 | ||| | || | | |||||| |||||||| || ||||| || || | | | ||| Sbjct 1699479 AAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCA 1699538 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 || |||||| || |||||||| | || | || || ||| | || || | |||| Sbjct 1699539 GGGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATT 1699598 Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT- 54291 || | | |||||| || | || || || ||| || | | || |||| | || Sbjct 1699599 GGTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTGGCCCTTATG 1699658 Query 54292 -ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 | | || | || || || || || ||| ||| || || | || ||| ||| | Sbjct 1699659 CAGT-GTACGT-TTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTGTTCCA 1699716 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 | | | || ||||| ||| ||| ||| |||| | | || ||||| |||| Sbjct 1699717 CTGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACACGACGACA 1699776 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 || | | | | || | || || || ||||| || || || ||||| | | Sbjct 1699777 ACTGCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAATAACGCT 1699836 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530 |||| | | ||| || || || ||||| || || ||||| | ||| || |||| | Sbjct 1699837 CAGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATACCTATAG 1699896 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590 | || | ||||||||| ||||| ||||| ||||| ||||| || ||||| ||||| | Sbjct 1699897 CTACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTAGCAAAT 1699956 Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 | ||| | |||| ||||| || || || |||||||| |||||| || || ||||||| Sbjct 1699957 AAGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAA 1700016 Query 54651 TAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAATACTTGAAAT 54708 | || || | || || ||| | ||||||| |||||| | ||||| Sbjct 1700017 TTGACGAATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGTATT--CGGAAAT 1700074 Query 54709 AATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTC 54768 | || || || ||| | | ||| ||| | | | | | ||| | || || || Sbjct 1700075 CAATGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATAACCTC 1700134 Query 54769 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 54828 |||| |||||| ||||||||||| | ||| || || || || | ||| || | || Sbjct 1700135 TGAGAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCCAATAT 1700194 Query 54829 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAA 54888 ||||||||| ||| | |||||| | || ||||| | || || | || | |||||| Sbjct 1700195 GGCATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTGTCCAG 1700254 Query 54889 TTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGG 54948 |||| || || || ||| || | || | || ||||||| | || | || Sbjct 1700255 TTCTTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGG 1700314 Query 54949 ATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATC 55008 ||| | | ||| |||| ||||||||||||| ||| || || ||||| |||||||| Sbjct 1700315 ATCAACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATTTTATC 1700374 Query 55009 AAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 || ||| || | ||||||| ||||| |||||||| ||||| | ||| Sbjct 1700375 GAA-ATGTACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAATAATTT 1700422 >seq869 Length=1271022 Score = 297 bits (328), Expect = 2e-75 Identities = 508/727 (70%), Gaps = 15/727 (2%) Strand=Plus/Minus Query 23950 CCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 ||||||| | ||| | ||| || ||||| || |||||| ||| | || ||||| Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| ||||| | || || || | ||| | ||||| ||||| |||||||| |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 24070 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 24129 | || || ||||| | | | | ||| ||| || | | | ||||||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACA 483979 Query 24130 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 | || ||| || ||||| || |||| |||||| || | || || || ||||| || Sbjct 483978 TTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAAT 483920 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 || || || ||||| || ||||| || || |||||||| ||||| ||||| ||| | Sbjct 483919 GTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTA 483860 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC 24307 |||||||| || ||||| || ||||| ||||||| | ||| ||| || || | | || Sbjct 483859 AAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTC 483800 Query 24308 --ATGTATCCA--CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | ||||| | || |||||||||||||| || ||| ||||| || || | Sbjct 483799 GAAGAAATCCAAGCCATT--GCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAA 483742 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 |||||||||||||||| | | | || ||| |||| ||| ||||||| | || || Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 |||||||||| || || | ||||| ||||| |||||||| || |||||||| | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | |||| ||||||||| | | || ||||| | | ||||||||| || || || || Sbjct 483621 CTGTAACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGG 483562 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTT 24600 || || || || || | |||||| || |||| | | ||| |||| ||| Sbjct 483561 AAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTC-GGTG--AGTC 483505 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | | ||| || | |||||||||| | ||| |||||||| || |||||||| || || | Sbjct 483504 TTTCCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTT 483445 Query 24661 CTGCCTT 24667 | ||||| Sbjct 483444 CGGCCTT 483438 >seq583 Length=2816 Score = 100 bits (110), Expect = 3e-16 Identities = 302/461 (66%), Gaps = 4/461 (1%) Strand=Plus/Minus Query 23819 GTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 23878 ||| | || || |||||| || || ||||| |||| ||||| || || || || || Sbjct 641 GTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAGAAGTT 582 Query 23879 AGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGAT 23938 ||| ||||| | || || ||||| |||||||||||| | ||||||| ||| || || || Sbjct 581 AGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTGTAAAT 522 Query 23939 TCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCAT 23998 | | | ||||| || || || | || || || |||| | || ||||| Sbjct 521 CTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGATTCAT 462 Query 23999 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACA-GTAAGAAATTCTTGTT 24057 || ||| |||||| || | | | ||| || | ||| || | ||| | ||||||| Sbjct 461 CAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAG-TACTCTTGTT 403 Query 24058 CAATAGAGACCGCGTCTGTTATAATA-GATCTTACTGTTTCTTCACTCGGTGGATACAAT 24116 ||||| || || || || |||||| | || | | || ||| || | | | | Sbjct 402 CAATATCAACAGCCTCGGTCATAATACGCTC-AATAATCTCACGACTGGGACGGTTCTCT 344 Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176 || || || | | ||| |||||||| ||| | |||||| ||||| ||| | Sbjct 343 AAGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAGC 284 Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 || || || || | || ||||| | ||||||||| || | ||| || |||| || Sbjct 283 TCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGCG 224 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||| ||||| | || || || || || || || Sbjct 223 AATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGC 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708886936240