Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq964 123 2e-23 >seq964 Length=291957 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 |||||||||||| ||| | || || || || ||||| ||||| ||| || ||||| Sbjct 215180 AAAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACC 215239 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || ||| | | || ||||| |||||| ||||| || ||| | ||| ||| Sbjct 215240 TTCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGA 215299 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||||||| | || || ||||| || |||||| ||||||| ||| || ||||||| Sbjct 215300 TCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTA 215359 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| || ||||||||||| ||| |||| |||| || || || || Sbjct 215360 TAATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGG 215410 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| ||||| ||||||||||| || ||| ||||| | Sbjct 216883 ATGCAAATCTTCGTTAAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCC 216942 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||| ||||| |||||| | ||| |||||| Sbjct 216943 GATACCATTGAGAACGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 217002 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || ||||||||||||||| || || | || ||||| Sbjct 217003 CAACGTTTGATCTTCGCCGGTAAACAACTGGAAGATGGTCGTACCTTGTCTGACTACAAC 217062 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||| || || || || ||||| |||| | || ||||| Sbjct 217063 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGTCTTCGTGGAGG 217109 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || |||||||| ||||||||||| || ||| || || | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| || |||||||| | || ||||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| ||||||||| ||||||| || || | ||||| ||| Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| | || |||| ||||| || || || || Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428327057549015