Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1303 196 7e-45 seq964 178 2e-39 seq1266 154 2e-32 seq1190 131 3e-25 seq1304 105 1e-17 >seq1303 Length=344040 Score = 196 bits (216), Expect = 7e-45 Identities = 442/656 (67%), Gaps = 15/656 (2%) Strand=Plus/Plus Query 205312 ACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttttt 205371 |||| | |||||| ||||| || || || |||| |||||| ||||||| || Sbjct 95792 ACTTCACGTTTTATAAGCAATTTAGGGAAAGGACGTGGTTTACGTTTCAATTGTTCCTTC 95851 Query 205372 AATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATAT 205431 || | ||||||||| ||| | ||| | || |||| | |||||||||| || | Sbjct 95852 AAAGGTTCAATATGATTCTTATAAACATGAGTATCACCAGTGGTATGAATAAAATCTCCT 95911 Query 205432 GGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTA 205491 ||||| ||| || | ||| ||||||||||| || | |||| ||| ||| | |||| Sbjct 95912 GGTTTCAAACCGGTAATATGAGCAATCATATATGTTAGTAAAGCATATGAAGCTATATTA 95971 Query 205492 AATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTA 205551 ||||||||||| | |||||| ||||| | ||| |||| || |||| || || | Sbjct 95972 AATGGTACACCCAGACCCATGTCAGCGCTGCGTTGGTACAACTGGCATGATAG---TTCA 96028 Query 205552 TTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACA 205611 ||| |||| |||||| | ||||||||||| || || | | |||| | | | | Sbjct 96029 CCATTTGCCACATAGAATTGTGCCAAACAATGACAGGGCGGCAAAGCCATTTGTGGTATA 96088 Query 205612 TCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttta 205671 || | |||||||||||||| | || ||| || | | || ||| | |||| || Sbjct 96089 TCGAGAGGATTCCAGGCTGACATAATAATACGTCGATCATTGGGATTAGTACGTATTGTA 96148 Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAAT--TTGTATCCATATCAA 205729 || || | | | | ||||| | || | ||| | |||| | || | | | Sbjct 96149 TTGATGACCTCCTTCAGCTGATCCACACCCTCATTGGAGTAATCATCGTGGCAAGTGC-- 96206 Query 205730 TATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 |||||| |||||||||||||||||||| |||||||| || ||||| |||||||| |||| Sbjct 96207 GATATTTGGCACCAAAATGACGCCATTGGAAACCATACACAGGACCCAAATCACCCTCTT 96266 Query 205790 TTCTATCATTAAAACCACGtttttttatatatttta--atgatccattttcatcccaaat 205847 | || ||||||| ||| | | | | |||| || | | ||| |||||||||| Sbjct 96267 CGCGTTCGGTAAAACCTAATTTATCCA-AGAATTTACGATCA-CTATTACCATCCCAAAT 96324 Query 205848 atggattcctttattttttaGAATATTT--GTATTAGTTGATCCAGATATAAACCATAAT 205905 || || || | | || ||||||| | || || | ||| || |||||| ||| Sbjct 96325 GTGTAT--GTTCTTCTCTTGCAATATTTTGGCATCGGTGCAACCATGTACAAACCACAAT 96382 Query 205906 AATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGA 205961 | |||||| | | | | |||||| | | |||||| || || |||||||| || Sbjct 96383 AGTTCTTCGGCCACCGCACGCCAAAATACTCGTTTTGTGGTTAACAATGGAAACGA 96438 >seq964 Length=291957 Score = 178 bits (196), Expect = 2e-39 Identities = 182/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||| | || |||||||| || ||| | || |||| | | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || || | || ||||| ||||||||| Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || ||||||||||| |||||||| || ||||| || ||| || Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCATGCAAATTT 215649 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| |||| ||||| || || || | ||| | ||| | Sbjct 215183 AATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCTTC 215242 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || |||||||||||||| || ||||| || || ||||| Sbjct 215243 GGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGATCA 215302 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || |||||||| || |||||||| || || | || || || |||||||| Sbjct 215303 ACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAA 215362 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||||| ||| | || |||||| ||||||| || ||||| || Sbjct 215363 TATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGGCAT 215413 Score = 136 bits (150), Expect = 6e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || ||||| || || | ||| ||||| | Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||| ||||| ||||||||||| || || |||||| Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || ||||| || || ||| | || || ||| |||||||| Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| || | || ||||| || ||||| || |||||||| ||| || Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGGTATGCAAATTT 215877 >seq1266 Length=2164085 Score = 154 bits (170), Expect = 2e-32 Identities = 306/458 (67%), Gaps = 0/458 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||||| ||||| ||||| || ||||||| | ||| |||| ||| | Sbjct 369216 CCCACATAACCATTGGGATCTCGACCATCTAAACTATACTTATTATTAAGTAAAATGGCA 369157 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || | || || |||| |||||||||||| ||||| |||||||||||||| Sbjct 369156 TATTCCAAAGCCTGCTCGGGAGATTCTGTCCATTCTAAGATTTTCTTAGCCCAATACATG 369097 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 | |||| | |||||||||||||| | ||| || || ||| | | |||||||||| Sbjct 369096 CGTAAAAAGCCATGCATTTTACCCTCATTAACCAGCTGCAGTTGCGCAGAATTCCATAAA 369037 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | ||||| || | ||||||| || | || |||| | | || | |||| Sbjct 369036 TCATCATGGGTACGAGACTTTTCAAATTCTTCTAGGGTATAGCAAGGATTACGCTTATCT 368977 Query 203108 TTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAA 203167 || ||| || |||||||| || |||||| || ||| | | ||| || || Sbjct 368976 TTGCGATGATCGTTTAGTGTCTTGGCTGCCCAGGCATGTAAACCTTGAAGATTGTCATAG 368917 Query 203168 TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAA 203227 |||| || ||||||||||||||||| || ||| | || ||| |||||||||||| Sbjct 368916 TTTTTGTTGTAATAACAAAAATTATCCGCCAGCTCTCGTCTAACAATGGCTTCTTCACAA 368857 Query 203228 AAAACTTCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTT 203287 || |||| || || | | || | ||||||| | |||| ||||| | | | Sbjct 368856 AATGCTTCCACAGAATCTTTAAATTTTGTTTTATACTCCTTAACCTCTAAGACGCAACGT 368797 Query 203288 TGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAA 203325 || ||| || ||||||||||| | ||| || ||||| Sbjct 368796 TGCACTGATATCTGACCAAAATGAAACCAAGGAGATAA 368759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/208 (72%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 203810 AAATGTA-TATTTAAATTTTTACATTCTTCTTCCATTTGTTTAACACCATTCAACATAAA 203868 ||||||| ||||||||| ||||| ||||| ||| | || | ||| |||||||| Sbjct 368266 AAATGTAATATTTAAATCATTACACTCTTCGGCCACCTCTTGTAGACCGCCTAACATAAA 368207 Query 203869 ATCAAATTGTCTAATTGTAGCATTAAGAAATTCTGGTACTAAACATATACA-CATATGTA 203927 | | | ||||| || || ||||||||||||| || |||||||| | ||| || | Sbjct 368206 TTTATAATGTCTTATGGTGGCATTAAGAAATTTAGGCACTAAACA-AAACACCACCACCA 368148 Query 203928 ATGACGATTTTGATTTTAATGCTAATTCTTGTGCATAAATTAAACCCCAATTATCTTGAA 203987 | | ||| | ||||||| ||||| ||| ||||| | ||| ||||||||||||| | Sbjct 368147 AGGGTAATTGTAATTTTAAGGCTAAACGTTGAGCATATAAAAAAGCCCAATTATCTTGCA 368088 Query 203988 TTCTTTGATCTCTA-ACACACCAATATA 204014 | | ||| ||| ||| |||||||| Sbjct 368087 CGCGTACATCCCTAGACA-TCCAATATA 368061 >seq1190 Length=275307 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||||| || ||| | || || ||||| || || || || ||| | ||| | || | Sbjct 186671 CAATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGT 186730 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| | ||| || ||||| || |||||||| || ||||| |||| Sbjct 186731 CCGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATC 186790 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | | ||||| || ||||||||||| || ||| | || || | ||||| | Sbjct 186791 AACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACA 186850 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||||| |||||||| ||||| || || | || |||||| Sbjct 186851 ATATTCAAAAAGAATCCACTTTGCACTTGGTATTGCGCCTTCGTGGTGGT 186900 >seq1304 Length=336898 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| ||||||||||| || || ||||||||| | | || || || || ||| Sbjct 274315 AAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAACAACGTTTGATCTTCGCTGGTAAA 274256 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| |||| || || || || || || ||||| ||||| ||||| ||| Sbjct 274255 CAATTGGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTTTACAT 274196 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | || |||||||| Sbjct 274195 TTGGTACTCCGTCTTCGTGGTGGTAT 274170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755439823798400