Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1348 152 4e-32 seq964 122 8e-23 seq1190 105 6e-18 >seq1348 Length=1847788 Score = 152 bits (168), Expect = 4e-32 Identities = 693/1089 (64%), Gaps = 26/1089 (2%) Strand=Plus/Plus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT- 132937 || |||||||| | | || | ||||| |||||||| | ||||||||||||||| || Sbjct 1698162 TCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTC 1698221 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTC 132997 ||| || | | ||| | || || || |||||| | || |||| | || || Sbjct 1698222 TTTAAGCCTGATTTCC-AGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTC 1698280 Query 132998 GGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCAT 133057 ||| ||| || ||| | ||||||||| ||||||||||||| |||||||||| ||||| Sbjct 1698281 GGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCAT 1698340 Query 133058 GTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTG 133117 | ||| | ||| |||||||| | || ||| | |||| | ||| | Sbjct 1698341 TTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATGTTT 1698400 Query 133118 TGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTC 133177 |||||||| || ||| || | ||| ||| | || | ||| || || || ||| Sbjct 1698401 GGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTC 1698460 Query 133178 CGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAA 133237 | | | || || ||| ||| |||| | | || || ||||| || | || Sbjct 1698461 ATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAA 1698520 Query 133238 CTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTT 133297 || || | | ||| ||||| || | ||| || ||| ||||||| || ||||| || Sbjct 1698521 TTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATT 1698580 Query 133298 GTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCT 133357 |||||| || || || || |||| || |||||||| || | | |||||| || | Sbjct 1698581 GTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCG 1698640 Query 133358 TACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC-AGATTGTTGGAAT 133416 ||| || | | | || || || ||| || ||||| |||| || ||| || Sbjct 1698641 TACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGG--- 1698697 Query 133417 GATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCACCGGAC 133476 ||| | || | || | | | || | |||||| | || || |||| Sbjct 1698698 ---------TGTTTTATTCCACATA----TCATATTGTAGTATACCCTTACTTACTGGAC 1698744 Query 133477 TGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCAAAG 133536 | | | || | |||||| | || | ||| ||||| || || ||||| ||||||| Sbjct 1698745 AGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAG 1698804 Query 133537 CGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACCTGGCATCGTCGCTATCG 133595 || || | ||||| ||||| || || | || || || | || | || || || Sbjct 1698805 CGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAAT-GCCTTTTCACTCTCA 1698863 Query 133596 TAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGG 133654 |||| | | || | | || || | ||||| |||||||| | || | || || || Sbjct 1698864 TAGG-GGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGG 1698922 Query 133655 TCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGAT 133714 ||||| |||| | | | |||| | ||||| ||||| ||||||||| Sbjct 1698923 ACGATGACGCAAATTGGACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGAT 1698982 Query 133715 CTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAAATGT 133774 ||||||||||| | |||| ||| || | || ||||| | ||||| || Sbjct 1698983 TTTGTTGAGATTCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGT 1699042 Query 133775 CTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGGCCGT 133834 ||| | | ||| ||| || | || | |||||| ||| | ||||||||| || | Sbjct 1699043 CTTTTC--TGGCGT-GACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTAT 1699099 Query 133835 CTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCC 133894 ||| | | | |||| | || ||||| | ||| | ||||||||| || |||||||| Sbjct 1699100 CTCATCAGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCC 1699159 Query 133895 CAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCC 133954 | |||| || ||||| | |||||| ||| ||||| | ||| || || || Sbjct 1699160 AATGTTTTGCTGGTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACC 1699219 Query 133955 GGTTTCGAC 133963 |||||| || Sbjct 1699220 GGTTTCAAC 1699228 >seq964 Length=291957 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || | ||| |||||||| | ||||| |||||||||||||| |||||| Sbjct 215868 TACCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGG 215809 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||| || | |||||| |||||| | || | |||||| ||||| || | Sbjct 215808 ATAAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGG 215749 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| |||||| | ||| | || |||| || | Sbjct 215748 GAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAA 215689 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | ||||| || || | ||||| || ||||| |||||| Sbjct 215688 CCTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||||| ||||||||||| || |||||| || |||||| || || Sbjct 215392 ACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCC 215333 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || || | || ||||| || ||||| || || || |||||||| ||| | Sbjct 215332 AATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGA 215273 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||||| | ||| | || |||| |||||||| | ||| | || ||| Sbjct 215272 ATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 215213 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATT 118746 || || | ||| || || || || ||||| ||||| Sbjct 215212 CCAGTTAAAGTCTTCACGAAGATTTGCATTTTTTATT 215176 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||||| ||||| |||||||| || || || || ||| || Sbjct 217092 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCTTC 217033 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || ||| |||| | ||| |||||||| || || || || ||||| || Sbjct 217032 CAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTG 216973 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | || | ||| || | ||||| || | || | ||||| Sbjct 216972 GATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTTTT 216913 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || || ||||| Sbjct 216912 GCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 >seq1190 Length=275307 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | || || ||||||||||| |||||||| | ||| || ||| Sbjct 186885 CAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATC 186826 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | |||||||||||| | || | ||| || ||||| || || || || || ||||| Sbjct 186825 TTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 186766 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||| || | ||| | ||||| | ||||||||| | || | || Sbjct 186765 CTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATGGT 186706 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 118741 || || || || ||||| |||||||||||||| || Sbjct 186705 CTTACCCGTTAGGGTTTTGACAAAAATCTGCATTGC 186670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821342841396