Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1266 127 4e-24 >seq1266 Length=2164085 Score = 127 bits (140), Expect = 4e-24 Identities = 271/398 (68%), Gaps = 10/398 (3%) Strand=Plus/Plus Query 189170 TTATCTCCGTGGCTACATTTTGGTCATGTATCCGCACAACGTGTTGCCTTAGAAGTATTA 189229 |||||||| ||| | ||||||||||| |||| | |||||| | |||||| || || Sbjct 368759 TTATCTCCTTGGTTTCATTTTGGTCAGATATCAGTGCAACGTTGCGTCTTAGAGGT--TA 368816 Query 189230 AAATGTATACGAGAAAGCaaaaaaaaC--GTTGAAACGTTTATAGATGAAATAATTGTAA 189287 | ||||| | ||| ||| | || ||| | ||| || ||| ||||| | Sbjct 368817 AGGAGTATAAAACAAAATTTAAAGATTCTGTGGAAGCATTTTGTGAAGAAGCCATTGTTA 368876 Query 189288 GAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTATCCA--GTC 189345 || |||| || |||||||||||||||| || |||||| | ||||| | | | || || Sbjct 368877 GACGAGAGCTGGCGGATAATTTTTGTTATTACAACAAAAACTATGACAATCTTCAAGGTT 368936 Query 189346 TACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAAGTATAT 189405 ||| || | ||||| || ||| || | ||||| || ||| | || | Sbjct 368937 TAC--ATGCCTGGGCAGCCAAGACACTAAACGATCATCGCAAAGATAAGCGTAATCCTTG 368994 Query 189406 ATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACA 189465 ||| || | || || | ||||| | || |||||| | ||||||| | | || Sbjct 368995 CTATACCCTAGAAGAATTTGAAAAGTCTCGTACCCATGATGATTTATGGAATTCTGCGCA 369054 Query 189466 AATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAA 189525 | ||||| |||| | || || ||||||||| | |||||||| ||||||||||||||||| Sbjct 369055 ACTGCAGCTGGTTAATGAGGGTAAAATGCATGGCTTTTTACGCATGTATTGGGCTAAGAA 369114 Query 189526 GATACTTGAATGGACTAGAA-CACCTGAAGACGCTTTG 189562 || | |||||||| |||| | || || | |||||| Sbjct 369115 AATCTTAGAATGGAC-AGAATCTCCCGAGCAGGCTTTG 369151 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 188837 CCTTTTATACAAGTAGACGCTCATAATATAGTACCTTGTTGGGAAGCTTCTGATAAAGAA 188896 ||||| ||||||||||| || ||||||||||| || ||||| |||||||||||| | Sbjct 368411 CCTTTCATACAAGTAGATGCCCATAATATAGTGCCCGTTTGGGTGGCTTCTGATAAACAG 368470 Query 188897 GAATACGGTGCACGAACTTTAAGAAAAAAGATATTTGATAAATTATATGAATATATGACA 188956 ||||| |||||||| || || | || || || | ||||||| |||| | | || Sbjct 368471 GAATATGGTGCACGCACCATACGTAATAAAATTAATACTAAATTACCGGAATTTCTAACT 368530 Query 188957 GAATTTCCTG 188966 |||||||||| Sbjct 368531 GAATTTCCTG 368540 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 188487 TATACTGGATGTTTAGAGATCAACGTGTACAAGATAATTGGGCTTTAATTTACGCACAAC 188546 |||| ||||||| ||| ||| ||| || ||||||||||||||||| | || || |||| Sbjct 368061 TATATTGGATGTCTAGGGATGTACGCGTGCAAGATAATTGGGCTTTTTTATATGCTCAAC 368120 Query 188547 GATTAGCGTTAAAACTCAAAATACCTCTAAGAATATGCTTTTGTGTCGTGCCAAAATTTC 188606 | ||||| |||||| | || |||| | | |||||| | ||||| ||||||| Sbjct 368121 GTTTAGCCTTAAAATTACAATTACCCTTGGTGGTGGTGTTTTGTTTAGTGCCTAAATTTC 368180 Query 188607 ACACTACTACTTCTAGACACTTTATGTTTTTAATATCCGGTCTTAAAGAAGTCGCGGAAG 188666 | | | || ||||| | || ||| | || |||||| |||| || || |||| Sbjct 368181 TTAATGCCACCATAAGACATTATAAATTTATGTTAGGCGGTCTACAAGAGGTGGCCGAAG 368240 Query 188667 AATGTAA 188673 | ||||| Sbjct 368241 AGTGTAA 368247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923177032048520