Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1315 123 4e-23 seq1190 122 1e-22 seq964 120 5e-22 seq1030 87.8 3e-12 seq845 87.8 3e-12 seq1304 86.0 9e-12 >seq1315 Length=311857 Score = 123 bits (136), Expect = 4e-23 Identities = 232/341 (68%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 10353 GATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACT 10412 |||||| ||||| |||||| | ||| |||| | | |||| | |||| || Sbjct 245241 GATTTACGCAGTGCCTATGATCTAACTGTACCAGCCCGGGGTAAAGCTGTTGTAAATACC 245182 Query 10413 GATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTA 10472 || || || ||| | || || || | |||| |||| | || || | |||| | | Sbjct 245181 GACTTGCAAATTGAAGTGCCCAATGGTTCGTATGGAAGAGTGGCGCCTCGCTCTGGTCTT 245122 Query 10473 GCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAAT 10532 || | || || || || ||| |||| ||||| || | |||||||||||| | |||||| Sbjct 245121 GCAATTAAAAACTTCATCGATGTTGGCGCTGGCGTCGTAGACGAAGATTATCGTGGAAAT 245062 Query 10533 GTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGA 10592 |||| ||| || | ||||||||||| || ||||||| | | || | || ||| | Sbjct 245061 CTGGGTGTAGTACTGTTTAATCATTCCGATCAAGATTTCGAAGTCAAACGTGGCGATCGC 245002 Query 10593 ATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAGTCGATAGTTTA 10652 || | || || || || ||| |||||| || ||| || || | ||||||||| || Sbjct 245001 ATTGCGCAGTTGATCTGCGAACGAATTTTCTACCCTGAATTGGAACAAGTCGATAAATTG 244942 Query 10653 TCAGAAACAAAAAGATCTGATTTTGGTTTTGGATCTACTGG 10693 | |||| |||||| ||| ||||||||| || ||||| Sbjct 244941 GAAAAAACTAAAAGAGGAGATAGTGGTTTTGGTTCAACTGG 244901 >seq1190 Length=275307 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | |||||||| || ||||| |||||||| ||||| ||||| || Sbjct 186899 CCACCACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAG 186840 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || |||||||||||||| |||||||| | ||| ||||| || ||| Sbjct 186839 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 186780 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 186779 ATTCCTTCTTTGTCCTG 186763 >seq964 Length=291957 Score = 120 bits (132), Expect = 5e-22 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 |||||||| || | ||||||||||| || |||||||| || | ||| | || ||| Sbjct 215851 AATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGGCCATCT 215792 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || ||||| ||||| |||||||| | || ||||| || ||||| |||||||| ||| Sbjct 215791 TCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 215732 Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245 || |||||| ||| ||| || || | ||| |||||| Sbjct 215731 TGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTAATTGTT 215672 Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| ||||||||||||| ||| |||||||| Sbjct 215671 TTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 118 bits (130), Expect = 2e-21 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| || ||||||||||| |||||||||||| || | || | | || Sbjct 215624 TAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTC 215565 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| |||||||||||||| | ||| ||||| || || ||||||||||| || Sbjct 215564 TTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTC 215505 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| |||||| ||| || ||||| | ||||| || Sbjct 215504 TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGT 215445 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || || ||||| |||| || |||||||| Sbjct 215444 TTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/212 (67%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | |||||||||||| ||||||||||| || | ||| | | || || Sbjct 215392 ACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCC 215333 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 |||||||| || |||||||| | | ||| ||||| || ||||| || || |||||||| Sbjct 215332 AATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGA 215273 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||| ||| ||| || || || ||||| || || Sbjct 215272 ATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 215213 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || ||||| || || | ||| ||||||||||| Sbjct 215212 CCAGTTAAAGTCTTCACGAAGATTTGCATTTT 215181 >seq1030 Length=261330 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 23990 TTACTTTTTGAATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTAT---CAA 24046 |||| | || |||||| |||| |||||| | |||||| ||||| || | | | | Sbjct 186685 TTACATATTTAATAAACTCTTCGCCTTTCATAAGTTTGACATAGGGGCAATAGTGCCCCA 186626 Query 24047 ACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCAT 24106 |||| || |||||| |||||||||||||||| ||||| | || | ||||| Sbjct 186625 TCCATAGGGCATGTTGTTCCCAAGGATCATCGTCTAAATCCCAATCTTTGAGACCACTCA 186566 Query 24107 CACAATAAAAGCATTTAACTTTATCACTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTA 24166 ||| | ||| ||| ||| |||||| | || ||||| |||| |||||||| |||| Sbjct 186565 AACATTCAAAACATAAAACACTATCACCTACACCCTTATAATAGAAACCAGCTTCGGCTA 186506 Query 24167 GTTTTTC 24173 ||| ||| Sbjct 186505 GTTCTTC 186499 >seq845 Length=3640 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 23990 TTACTTTTTGAATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTAT---CAA 24046 |||| | || |||||| |||| |||||| | |||||| ||||| || | | | | Sbjct 2436 TTACATATTTAATAAACTCTTCGCCTTTCATAAGTTTGACATAGGGGCAATAGTGCCCCA 2495 Query 24047 ACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCAT 24106 |||| || |||||| |||||||||||||||| ||||| | || | ||||| Sbjct 2496 TCCATAGGGCATGTTGTTCCCAAGGATCATCGTCTAAATCCCAATCTTTGAGACCACTCA 2555 Query 24107 CACAATAAAAGCATTTAACTTTATCACTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTA 24166 ||| | ||| ||| ||| |||||| | || ||||| |||| |||||||| |||| Sbjct 2556 AACATTCAAAACATAAAACACTATCACCTACACCCTTATAATAGAAACCAGCTTCGGCTA 2615 Query 24167 GTTTTTC 24173 ||| ||| Sbjct 2616 GTTCTTC 2622 >seq1304 Length=336898 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||||||||||||| ||||| || || || || || || Sbjct 274173 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274232 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || |||||||| ||||| || ||||| | ||| ||||| || || Sbjct 274233 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 274292 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 274293 ATACCTTCTTTGTCTTG 274309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743510479240960