Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq869 275 6e-69 >seq869 Length=1271022 Score = 275 bits (304), Expect = 6e-69 Identities = 505/729 (69%), Gaps = 16/729 (2%) Strand=Plus/Minus Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||||||||| || || | ||| ||||||||||||||||| | |||||| | ||| | Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| ||||| || || || || | || ||||| | || | | ||| || || |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 16170 CTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAAC 16228 ||||| |||| || || | | | | || | | || ||| || || ||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATT-CTCTCTCGACTGGGACGTTGTACCAAATGTTTAAAC 483980 Query 16229 ATTA-TACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAA 16287 |||| |||| |||||||||||||| || || || || | ||| ||||| || || || Sbjct 483979 ATTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAA 483921 Query 16288 TGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGA 16347 ||||||||| ||||| || || ||||| || | |||||| || | ||||| ||| Sbjct 483920 TGTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACT 483861 Query 16348 AAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT-CT-Attt 16405 |||||| ||||| || || || ||||| |||| | || ||||| | || || |||| Sbjct 483860 AAAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTT 483801 Query 16406 ---ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | | | | ||||| ||||||| || || | |||||| ||| | Sbjct 483800 CGAAGAAATCCAAGCCATT-----GCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTT 483746 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || || |||||||| | ||||| | || | ||| ||||||| |||| ||||| Sbjct 483745 TCAATAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGA 483686 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 | |||||||||||| || || | ||| ||||| || || ||||| ||||| || || | Sbjct 483685 ATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGT 483626 Query 16583 GCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 || || | | ||||||||| ||| | || | ||| | | ||||| || || || || Sbjct 483625 GCCTCTGTAACTTGTACTTCTTGAG-AGAAACGTTCGACAAGATTTTCATTGACAATGCC 483567 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 |||| ||| || || || ||||| | ||| ||| |||| || || || | || Sbjct 483566 ATCGGAAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAG 483507 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 | || |||||| || |||||| || | ||| || |||||||| |||||||||||||| Sbjct 483506 TCTTTCCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGC 483447 Query 16762 AACAGCCTT 16770 | ||||| Sbjct 483446 TTCGGCCTT 483438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 15876 ATAATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAA 15935 || |||| |||||||||| ||||| | ||| ||||||||| || || | | Sbjct 484400 ATTATTACTTTTAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGATGAGAAGTTA 484341 Query 15936 CTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATG 15995 | || |||||||||||||| |||| | |||||||||||||||||| || || || | Sbjct 484340 CACCCAATTTTTGATATTCACCAACTTTACGTTCAAAGAAATTTGTTTTACCATCCAAAG 484281 Query 15996 AAATATTTTCCATAAAATCAAAAGGATTTTT 16026 | || |||||||||| || |||||||| Sbjct 484280 AGATCATTTCCATAAAGGGGAAGGGATTTTT 484250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502096461800