Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq964 96.9 3e-15 seq1304 91.5 1e-13 >seq964 Length=291957 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | || |||||||| || || || || ||||| || || ||| Sbjct 215411 GCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGA 215352 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| |||| |||||| ||||| || || | || ||||| || || || Sbjct 215351 CAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGG 215292 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||| || |||||| |||||| | | | ||| | || || Sbjct 215291 AATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGAC 215232 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| | ||| || |||||||| || | ||||||||| ||||||||||| || Sbjct 215231 CTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTT 215181 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||| || ||||||||||| || ||| | || ||| Sbjct 217091 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCTTCC 217032 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| |||||||| ||||| || || || || || || | ||| ||||| ||| Sbjct 217031 AGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGG 216972 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | | || | || || |||| || || || ||| Sbjct 216971 ATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTTTTG 216912 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| || || || ||||||||||| Sbjct 216911 CCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 >seq1304 Length=336898 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || | ||| ||||| || |||||||||||| || |||| | || || Sbjct 274190 TACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTC 274249 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||| || ||||| ||||| || ||||| || || || | ||| || ||||| Sbjct 274250 CAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTG 274309 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||| || | | | |||| | ||| || |||| |||||| ||||| Sbjct 274310 GATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTT 274369 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | ||| || || ||||| ||||| Sbjct 274370 ACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066951940973