Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq869 230 2e-55 seq583 138 1e-27 >seq869 Length=1271022 Score = 230 bits (254), Expect = 2e-55 Identities = 480/703 (68%), Gaps = 14/703 (2%) Strand=Plus/Minus Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 || || | ||| || | || || ||||||| |||||||| | ||||||||| ||||| Sbjct 484147 AGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATC 484088 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 | || || || | || || | ||||| | ||| || ||| || || | ||| Sbjct 484087 AAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATA 484028 Query 14150 ATAATCGTAATAATT-TCATTAGAA--GGAGGATATTTTAGATGTTTAAAAATTAA-ACA 14205 || || ||||||| || | || ||| | | | | ||||||||| ||||| ||| Sbjct 484027 ATT-TC--AATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACA 483971 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 |||||||||||||| | |||||||| | || | || || || ||||| | || Sbjct 483970 -GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACC 483912 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 ||||| | || ||||| |||| |||||| || | ||| || || |||||| || Sbjct 483911 AGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAAT 483852 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 ||||| || |||||||| || || | ||||| ||||| |||| ||| || || Sbjct 483851 ACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCGAAGAAAT 483792 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||| | ||||| || | || |||| | ||| ||||||||||||||||| Sbjct 483791 CCAAGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAA 483732 Query 14446 TAAATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 | || || || || | | ||| ||| || ||||||| || | ||||||||| Sbjct 483731 GAGATAATCACGCTGTTCACGATCCTT--AATATAACTATCAATTAGAATACTATACATT 483674 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 |||||||||| |||||||| || || ||||| ||||| ||||| | || |||| | Sbjct 483673 TCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACT 483614 Query 14564 TGTACCTCT-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 ||||| ||| ||| ||| | |||| | | ||||||||| || || ||||| ||| || Sbjct 483613 TGTACTTCTTGAGAGAAA-CGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGC 483555 Query 14623 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATC 14682 || || || | | | | ||| || | |||| | | | ||||| ||| ||| || Sbjct 483554 GAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTC 483495 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14725 || ||| ||||||||||||||||| || || ||||||||| Sbjct 483494 GGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAA 483452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| ||||||| | |||||||||||| | |||| | || |||| |||| Sbjct 484389 TAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGATGAGAAGTTACACCCAATTTT 484330 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||||| |||| | ||||||||| || |||||||| |||| || || ||||| Sbjct 484329 TGATATTCACCAACTTTACGTTCAAAGAAATTTGTTTTACCATCCAAAGAGATCATTTCC 484270 Query 13976 ATAAAATCAAATGGATTT 13993 ||||| || |||||| Sbjct 484269 ATAAAGGGGAAGGGATTT 484252 >seq583 Length=2816 Score = 138 bits (152), Expect = 1e-27 Identities = 316/474 (67%), Gaps = 4/474 (1%) Strand=Plus/Minus Query 13883 TTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAG 13942 || ||||| | |||| ||||| || || || || |||||||| | || |||||| Sbjct 646 TTTTCGTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAG 587 Query 13943 AAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATA 14002 |||||||| ||||| ||| || ||||| ||||| ||||| || ||||| | | | Sbjct 586 AAGTTAGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTG 527 Query 14003 AACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGA 14062 | | || ||| || | | | | ||| | || || | | |||||| || ||| Sbjct 526 TAAATCTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGA 467 Query 14063 GACATTAAATCACAATTCATACCTATTAGTTTTACAGG--AATTATATTGGTTAAAAATT 14120 ||| |||||| ||||||||| | | | ||||| || || || || | | Sbjct 466 TTCATCAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGG--AAGTACT 409 Query 14121 CTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGAT 14180 ||| ||| ||| ||||||||| | |||||| | |||||| ||| | ||| | | Sbjct 408 CTTGTTCAATATCAACAGCCTCGGTCATAATACGCTCAATAATCTCACGACTGGGACGGT 349 Query 14181 ATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAA 14240 | || || || | | ||| || |||||| || | ||||||||||| || Sbjct 348 TCTCTAAGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAA 289 Query 14241 TAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 14300 |||| || || |||||||| || |||||||| || || || || ||||| || || | Sbjct 288 TAAGCTCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGG 229 Query 14301 CAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATC 14354 |||||||||| || ||||| | ||||| || ||||| || || | ||||| Sbjct 228 CAGCGAATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335271774840