Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq964 105 5e-18 seq1304 96.9 3e-15 seq1190 87.8 1e-12 >seq964 Length=291957 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||||||||| || || |||| || || | ||| Sbjct 215395 AGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCT 215336 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || ||| | || || | ||||||||| ||| | || |||||||| Sbjct 215335 TCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCT 215276 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | | ||| || || || ||| |||| ||||||| | Sbjct 215275 TGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTC 215216 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||| || || || || || || |||||||||||| Sbjct 215215 TTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTTT 215180 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||| ||||||||||| || || || || | || ||| | ||||| Sbjct 215621 TACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTC 215562 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||||||| ||| | || | | ||||||||| || | ||||| || || Sbjct 215561 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 215502 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| | || || || | | ||| ||| ||| ||||| ||| | |||||| ||| Sbjct 215501 AATTT-TAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTT 215443 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||||| || ||||| |||||||| Sbjct 215442 TGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| || || || || || ||||| ||||||||||| | | Sbjct 217109 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 217050 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||| |||||| || || |||| | | ||| ||||| ||| Sbjct 217049 AAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 216990 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| |||| ||| || | ||| || || || ||| | Sbjct 216989 ATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACT 216930 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||||||||| ||||| || || |||||||| Sbjct 216929 TCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 >seq1304 Length=336898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 18114 AGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 ||||||| ||| ||||| ||||| ||||| ||||||||||||| || || || || Sbjct 274188 AGTACCAAATGTAAAGTG--GATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCAT 274245 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 ||||||||||||| || || |||| | | ||||||||| ||| | ||||| || | Sbjct 274246 CTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGT 274305 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | |||| |||||| | | ||| ||||| ||||| ||| | ||| ||| Sbjct 274306 CTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGG 274365 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || || ||||| || || || ||||| Sbjct 274366 TCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||| | || |||||||||||||| ||||| || | | || | |||||| Sbjct 186882 TACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATCTTC 186823 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||||||||| || || | || | | ||||||||| || | ||||| || || Sbjct 186822 CAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTG 186763 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||| | | || ||||| | | ||| |||||| |||||| |||| |||||| | | Sbjct 186762 AATCT-TGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATGGTCT 186704 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | || || | ||||| |||||||| |||||| Sbjct 186703 TACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336080364185