Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1348 446 1e-120 seq869 197 1e-45 seq964 123 2e-23 seq1190 100 3e-16 >seq1348 Length=1847788 Score = 446 bits (494), Expect = 1e-120 Identities = 1242/1899 (65%), Gaps = 29/1899 (2%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || ||||| || || || || ||||| ||||| || | | |||||||||||| Sbjct 1698159 TTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCG 1698218 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 ||||| | || ||||| || || |||||||| || |||||||| || ||| | ||| Sbjct 1698219 GTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGC 1698278 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | ||| | | ||||||||| ||||| ||||| || || || || || ||||| ||| Sbjct 1698279 TCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCC 1698338 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || | ||| || | || || ||||| || || ||||| || | | || | | Sbjct 1698339 ATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATGT 1698398 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 ||||| ||| || || | ||| ||| |||| || || |||||| || Sbjct 1698399 TTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATT 1698458 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 ||| | ||| ||| | | |||| |||||||| | || |||| | || || || | Sbjct 1698459 TCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTG 1698518 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 || || || ||||| || || | |||||| || || ||| ||||||| || |||||| Sbjct 1698519 AATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCA 1698578 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| || || || || ||||||||||| || ||||| || || || || | || || Sbjct 1698579 TTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTG 1698638 Query 22586 CTCAAGCCGTGCTTTGAA--ATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG 22643 | | || || |||| ||||| ||| | | ||||||| ||||| || | | Sbjct 1698639 CGTACACCATG--TTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGG 1698696 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGT 22703 | || ||| ||||||||| ||||| | | || ||| | || | ||| | Sbjct 1698697 GTGTTTTATT---CCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGAT 1698753 Query 22704 ACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAAT 22763 | ||||| || | |||| | | |||| | ||| || || || ||||| ||||| |||| Sbjct 1698754 AAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAAT 1698813 Query 22764 ATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATAC 22823 | ||||| ||||| || | | || || || | || || || || || Sbjct 1698814 AAATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAAC 1698873 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 |||| | | || | || || | ||||||||| |||||||| || || || | || Sbjct 1698874 GCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCA 1698933 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 ||| ||| | | || |||||||| ||||| | || ||||| || |||| | | Sbjct 1698934 AATTGGACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGAT 1698993 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTA 23003 | |||| | || ||| || | | || || ||| | | | Sbjct 1698994 TCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATC--AAAGGTCTTTTCTGG 1699051 Query 23004 CA--ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 | |||||| | || | ||| || ||||| | ||| || || || | ||| || || Sbjct 1699052 CGTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGC 1699111 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 | || |||||||| || || |||| ||||| ||||| || ||||| | || ||| Sbjct 1699112 AGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTG 1699171 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 ||||||||| || ||||| | ||| ||||| | ||| || || || || || || || || Sbjct 1699172 GTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTG 1699231 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTC 23241 | || || || || ||| | || |||||| | || || | | ||||| Sbjct 1699232 AGCTTCAATTATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTC 1699291 Query 23242 TTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGG 23301 || || ||||| ||||| | || || || |||| || || ||| ||||| Sbjct 1699292 TTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGG 1699351 Query 23302 CGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA---ACGCGTCTCATAAA 23358 ||| |||||||| || ||| | | ||||||| || ||| ||||||| Sbjct 1699352 ACATTTGTGTGGACACATTAGGGACCAG--TCAC-CATTTTCTTCCACACGTTTCATAAA 1699408 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 | || |||||||| ||||| ||||| || || | ||| | ||| || |||||||| Sbjct 1699409 CAAGTCGGGTATCCACAGAGCATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGT 1699468 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 || || || ||||||||||| || || | || | |||||| ||||| | |||| || Sbjct 1699469 ATTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGC 1699528 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 ||| || || || | || || |||||||| || || ||||| ||||| |||| Sbjct 1699529 AAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACAC 1699588 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA---CC 23595 || ||||| || || ||||| || || | |||| | || | || | ||| || Sbjct 1699589 CCTGAGCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGC---CGTCAATGGAAGTGCC 1699645 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 || || | | | ||| |||| | || || || || ||||||| |||||||| || Sbjct 1699646 CTTGGCCCTTATGCAGTGTACGTTTATGCCAATACCACCCGCCGATTTGGATATCATGGC 1699705 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT---GCTGTCCTCTTTGGTCGCGACCAA 23712 ||||||| || | | | | || ||||| || | || | ||||| | || Sbjct 1699706 ACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTC---AATAA 1699762 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 ||||||||| |||| |||| | | ||||| |||| ||||| ||| || || || Sbjct 1699763 GAAACACGACGACAACTGCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATG 1699822 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 ||||| || | | |||| | ||| || || || || || | |||||| || ||||| Sbjct 1699823 GGTAAAATAACGCTCAGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCC 1699882 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892 |||||||| || || || | ||| | ||| | || |||||||| || | || || Sbjct 1699883 ATGTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATT 1699942 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 ||||| | || ||| || | | || ||||| || || || |||| ||| |||||| Sbjct 1699943 CATTTTTAGCAAATAAGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTC 1700002 Query 23953 ACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATT 23991 |||||| | | || | |||||||||||| | ||||| Sbjct 1700003 ACGATCATAAATAATTGACGAATTCAAACGTTCTGCATT 1700041 >seq869 Length=1271022 Score = 197 bits (218), Expect = 1e-45 Identities = 371/541 (69%), Gaps = 16/541 (3%) Strand=Plus/Plus Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 ||||| ||||| || |||||||| || ||||||||||| || ||||| ||| ||| Sbjct 483438 AAGGCCGAAGCTTCTTTTTGGACGGTAGAAGAAGTAGATCTTTCTAAAGATAACTCCGAC 483497 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 ||||| |||| || |||| | |||| ||| ||| || | || || |||||| Sbjct 483498 TGGGAAAGACTCACCGACAATGAGCGTCATTTCATTTCACATGTTCTTGCTTTCTTCGCC 483557 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || |||||||| ||||| || || ||| | |||||| | || || |||||||| ||||| Sbjct 483558 GCTTCCGATGGCATTGTCAATGAAAATCTTGTCGAACGTTTCTCTCAAGAAGTACAAGTT 483617 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 || ||||| | || || || || |||||| | ||||| ||||| || || || |||||| Sbjct 483618 ACAGAGGCACGCTGTTTCTATGGCTTTCAAATTGCCATGGAAAATGTACACTCTGAAATG 483677 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGA----CAACGACGAGAAACGTAGACTGTT 57883 ||| | || || |||| || | ||||| ||| || || | || || Sbjct 483678 TATAGTATTCTAATTGATAGTTATATTAAGGATCGTGAACAGCGTGA----TTATCTCTT 483733 Query 57884 CAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATG 57940 || || || ||||| ||||| || | ||| ||||| || ||| |||| || Sbjct 483734 TAATGCTATTGAAACTATGCCAGC---TGTTAAGCGTAAGGCCGATTGGGCAATGGCTTG 483790 Query 57941 GATAAAAAGCGCCA-CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999 ||| || | | || | || | || | | || || || || || || || | Sbjct 483791 GAT-TTCTTCGAAATCAGCAAATTTTGGTGAACGTATTATTGCTTTTGCTGCTGTAGAGG 483849 Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059 |||| |||||| ||||| ||||| | || |||||| | |||||||| || || |||| Sbjct 483850 GTATTTTCTTTAGTGGCAGTTTTGCTTCCATCTTTTGGCTAAAGAAACGTGGTCTTATGC 483909 Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 | || || || || ||| ||||||||||| || || |||||| | ||| |||||||| Sbjct 483910 CTGGTCTTACATTCTCCAATGAGTTGATATCACGTGATGAGGGTTTACATTGTGATTTTG 483969 Query 58120 C 58120 | Sbjct 483970 C 483970 >seq964 Length=291957 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || || | || || ||||| || || | || |||||||| || Sbjct 215639 CATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTC 215698 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | |||| || ||| | ||| ||||| ||||| | || || || || Sbjct 215699 GGATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 215758 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || |||||||| |||||||||||||| ||| | ||||||||| Sbjct 215759 ACAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAA 215818 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||||||||||||| || ||||| ||||| Sbjct 215819 CATTCAAAAAGAATCTACCCTTCACTTGGTA 215849 Score = 118 bits (130), Expect = 9e-22 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 ||| ||| |||||||| ||||| |||||| | || ||||| || |||||| | || || | Sbjct 215176 AATAAAAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCG 215235 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 |||| || || | | |||| || || | ||| || ||||| || | || | Sbjct 215236 AACCTTCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCC 215295 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || || || |||||||| || || || ||||| ||||||||| ||| || || Sbjct 215296 CAGATCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCG 215355 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||| |||||||||||||| ||||| || |||| || Sbjct 215356 ATTATAATATTCAAAAAGAATCTACTCTCCACTTGGTTCT 215395 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| |||||||| ||||| | || ||||| || || Sbjct 215411 CATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTC 215470 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | |||| || ||| | ||| ||||| ||||| | || || || || Sbjct 215471 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 215530 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || ||||||||||| ||||||||| || || |||||||| Sbjct 215531 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAA 215590 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || ||||||||||| || | ||| ||||| Sbjct 215591 TATACAAAAAGAATCTACATTGCATTTGGTA 215621 >seq1190 Length=275307 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || || || || || || || ||||| | || || || |||||| Sbjct 186673 ATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTCC 186732 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| |||||| | || |||||| ||||| | || || || || Sbjct 186733 GACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAA 186792 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| ||||| |||||||| ||| | ||||| || Sbjct 186793 CAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAAT 186852 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||||||||| ||| | || ||||| Sbjct 186853 ATTCAAAAAGAATCCACTTTGCACTTGGTA 186882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756855026960