Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1303 172 1e-37 seq869 156 8e-33 >seq1303 Length=344040 Score = 172 bits (190), Expect = 1e-37 Identities = 436/654 (67%), Gaps = 17/654 (3%) Strand=Plus/Minus Query 35153 GATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGA 35212 ||| | |||||| || ||| ||||||||||||| | |||||| | ||| | | || Sbjct 96501 GATCGCACTGGAGTGGGCACTGTATCCATTTTTGGTGCTCAAATGCGTTTCGATATGCG- 96443 Query 35213 GACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAA 35272 | || | ||||| | | || || || | | || ||| | | || | |||||| Sbjct 96442 --CAACTCGTTTCCATTGTTAACCACAAAACGAGTATTTTGGCGTGCGGTGGCCGAAGAA 96385 Query 35273 CTCTCGTGGTTCAT-CAGGG--GCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATA 35329 || | |||||| | || || ||| | || |||||| |||| ||||||| ||| Sbjct 96384 CTATTGTGGTTTGTACATGGTTGCA---CCGATGCCAAAATATTGCAAGAGAAGAACATA 96328 Query 35330 CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGA 35389 ||||| ||| | | |||| | || |||| ||||| | ||| || ||| | Sbjct 96327 CACATTTGGGATGGTAATAGTGATCGTAAATTCTTGGATAAATTAGGTTTTACCGAACGC 96268 Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 | |||||| |||||||| || || || || ||||||||||||||||||||||| ||||| Sbjct 96267 GAAGAGGGTGATTTGGGTCCTGTGTATGGTTTCCAATGGCGTCATTTTGGTGCCAAATAT 96208 Query 35450 GATACCTGTTCTTCCGATTAT-ACTGGAA--AGGGTATTGATCAATTGGCCAATATACTA 35506 || || |||| || ||| || ||||| | ||||| || | | | Sbjct 96207 CGCACTTGCCA---CGATGATTACTCCAATGAGGGTGTGGATCAGCTGAAGGAGGTCATC 96151 Query 35507 AAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATG 35566 || || | | ||||| ||||| || | || |||||| | || ||||||||| | Sbjct 96150 AATACAATACGTACTAATCCCAATGATCGACGTATTATTATGTCAGCCTGGAATCCTCTC 96091 Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAA 35625 ||| | | | |||||| | || || || || || || | ||||| |||||||| || Sbjct 96090 GATATACCACAAATGGCTTTGCCGCCCTGTCAT-TGTTTGGCACAATTCTATGTGGCAAA 96032 Query 35626 TGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTT 35685 ||| ||| | || ||||||||||| || || |||| || | || |||| || || || Sbjct 96031 TGGTGAACTATCATGCCAGTTGTACCAACGCAGCGCTGACATGGGTCTGGGTGTACCATT 95972 Query 35686 CAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACC 35745 ||||| || ||||| || | || || || |||| || ||| ||| | ||||| Sbjct 95971 TAATATAGCTTCATATGCTTTACTAACATATATGATTGCTCATATTACCGGTTTGAAACC 95912 Query 35746 GGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGA 35799 ||||| ||||| | || |||||| | || ||||||| | || ||||| Sbjct 95911 AGGAGATTTTATTCATACCACTGGTGATACTCATGTTTATAAGAATCATATTGA 95858 >seq869 Length=1271022 Score = 156 bits (172), Expect = 8e-33 Identities = 240/336 (71%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||| | |||| ||| |||| |||||||| || || || || ||||||||||| | Sbjct 483811 ATTTTGGTGAACGTATTATTGCTTTTGCTGCTGTAGAGGGTATTTTCTTTAGTGGCAGTT 483870 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | || ||||| || ||| | ||||| | ||| || |||||||||| || | |||||||| Sbjct 483871 TTGCTTCCATCTTTTGGCTAAAGAAACGTGGTCTTATGCCTGGTCTTACATTCTCCAATG 483930 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCA-TGCTGTTGAAAAAG 102079 |||| || || | || || ||| | ||| | || ||||| || | | |||| ||| | Sbjct 483931 AGTTGATATCACGTGATGAGGGTTTACATTGTGATTTTGC-TGTATTAATGTTTAAACA- 483988 Query 102080 GGTTTTGTTGATAC--CCCA-TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTC 102136 |||| | || |||| || |||| || ||| |||||||| |||||||||| || Sbjct 483989 ---TTTGGTACAACGTCCCAGTC--GAGAGAGAATTATTGAAATTATCACTGAAGCGGTG 484043 Query 102137 CGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGC 102196 ||||||||| ||||| || |||| | | |||| || || || | || ||||| || Sbjct 484044 AAAATTGAACAGGAATTCCTTACAGATGCTTTGCCCGTCAATTTGATAGGCATGAATTGT 484103 Query 102197 AAGTTGATGAGCCAGTACATTGAATTTGTGGCAGAT 102232 || || ||| | || || ||||||||||| ||| Sbjct 484104 AAATTAATGTCGGAATATATAGAATTTGTGGCCGAT 484139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562280795915