Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1348 551 7e-152 seq869 284 2e-71 seq583 127 3e-24 seq1394 100 4e-16 >seq1348 Length=1847788 Score = 551 bits (610), Expect = 7e-152 Identities = 1494/2266 (66%), Gaps = 28/2266 (1%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 || |||||||| | | || || ||||| || | | ||| ||||| || || |||| Sbjct 1698168 GTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAG 1698227 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||| | || ||||| || || | |||| ||| | || || || | | Sbjct 1698228 CCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACA 1698287 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || ||||| | |||||||||||||| ||||| || || | ||| |||||||||| |||| Sbjct 1698288 TGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATG 1698347 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62284 | ||||| | ||| ||||||| ||||| || | || | || ||| || || | Sbjct 1698348 GTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTA-TATGTTTGGGTAT 1698406 Query 62285 GT-TTGTATTC--TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 | || ||| || ||||| || | || ||||| |||| || || ||||||| Sbjct 1698407 TTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATC 1698466 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 |||||| | ||||||||| || |||| | ||| | || || || | ||||||||| Sbjct 1698467 CCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCC 1698526 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 ||||| || | | ||||||||||||| ||| |||||||| | || ||||| || || Sbjct 1698527 CGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCC 1698586 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | |||||| || || || || || ||||| || || | | ||| ||| | | ||| Sbjct 1698587 TAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACC 1698646 Query 62522 GTATGTT--CTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACA 62579 ||||| |||||||| || || | | | ||| ||||| | || | ||| | Sbjct 1698647 --ATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTA 1698704 Query 62580 NNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATA 62638 ||||||||| ||||| ||||| | | || | || ||| || ||||| Sbjct 1698705 TTCCACATATCATATTGTAGTATACCCTTACTTACTGGAC-AGCCGGGATAAGTTTCATA 1698763 Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62698 || || || || || || | || |||||| || || || || || |||||||| ||||| Sbjct 1698764 TGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTC 1698823 Query 62699 AAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAAT 62758 || |||| | ||||| ||| | || ||| | || ||| | | ||| Sbjct 1698824 GAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGCATTAAAAT 1698883 Query 62759 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62818 || | || || || || |||||||| ||||| ||||| | ||| | | ||| || | Sbjct 1698884 CAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGACTT 1698943 Query 62819 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62878 | |||||| || | |||||| | || || || || ||||| |||||||| || ||| Sbjct 1698944 TCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTAAT 1699003 Query 62879 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACAT 62935 ||||| |||| |||| ||| |||||||| | ||| | |||||||| Sbjct 1699004 AACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTTTTCTGGCGTGACAAACAT 1699063 Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 || | |||| || |||| |||||| || |||| ||||| || | | ||||| || Sbjct 1699064 ATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCTAC 1699123 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 ||||| ||||| | || || ||||| || || || | ||||| || || || || Sbjct 1699124 AATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTGCG 1699183 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 ||| || ||||| || || | || | || ||||| ||||||| |||| ||| || || Sbjct 1699184 GTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATTAT 1699243 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATA 63174 || ||| | | |||| || | | |||| | | ||||| || |||| || Sbjct 1699244 AGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTT-CTTTTTCATACT 1699302 Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCG 63234 ||||||||| ||||||||| || |||||||||| | || | ||||||| | | Sbjct 1699303 TGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTGTG 1699362 Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294 ||||||| | ||||| || || | || | ||| ||||||||||| | || || |||| Sbjct 1699363 GACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCC 1699422 Query 63295 AAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 | ||||| ||| || |||||||| | |||||| || || || || ||||| || || | | Sbjct 1699423 ACAGAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTTAAA 1699481 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || | || | | |||||| |||||||| || ||||| || || || | | ||||| Sbjct 1699482 TCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGG 1699541 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 |||||| || |||||||| | || | || || ||| | || || | |||||| Sbjct 1699542 CGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATTGGT 1699601 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--AT 63531 | | ||| ||||| | || || || ||| || | || |||| | || | Sbjct 1699602 ACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTGGCCCTTATGCAG 1699661 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | || | || || || || || ||| ||| || || | || ||| ||| | | Sbjct 1699662 T-GTACGT-TTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTGTTCCACTG 1699719 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 | | || || || || ||| | | |||| | | || ||||| |||| | Sbjct 1699720 ACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACACGACGACAACT 1699779 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | | | | | || | || || || ||||| || || || ||||| | |||| Sbjct 1699780 GCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAATAACGCTCAG 1699839 Query 63712 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 63771 | | | ||| || || |||||||| || || ||||| | ||| || |||| || | Sbjct 1699840 ACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATACCTATAGCTA 1699899 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 | | ||||||||| ||||| ||||| |||||||| || || ||||| | ||| || | Sbjct 1699900 CTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTAGCAAATAAG 1699959 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63891 || | |||| ||||| || || || |||||||| |||||| || || |||||||| Sbjct 1699960 ATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAATTG 1700019 Query 63892 CCGAATTGAGCTTATCCTTATATTTGTTAACTATAT--CCATGGTAATACTTGAAATAAT 63949 |||||| | || || ||| | |||| || |||||| | ||||| | Sbjct 1700020 ACGAATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGTATT--CGGAAATCAA 1700077 Query 63950 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 64009 || || || ||| | | ||||||| | | | | ||| || || || Sbjct 1700078 TGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATAACCTCTGA 1700137 Query 64010 AAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGC 64069 |||| |||||| ||||| ||||| | ||| || | || || | || || | ||||| Sbjct 1700138 GAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCCAATATGGC 1700197 Query 64070 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 |||||| ||| | |||||| | || ||||| | || || |||| | |||||| ||| Sbjct 1700198 ATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTGTCCAGTTC 1700257 Query 64130 TACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATC 64189 | || || || ||| || | || | ||| ||||||| | || | ||||| Sbjct 1700258 TTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGGATC 1700317 Query 64190 TATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAA 64249 | | |||| |||| |||||||| || | ||| || || || || |||||||| || Sbjct 1700318 AACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATTTTATCGAA 1700377 Query 64250 CATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64294 ||| || | ||||||| ||||| |||||||| ||||| | ||| Sbjct 1700378 -ATGTACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAATAATTT 1700422 >seq869 Length=1271022 Score = 284 bits (314), Expect = 2e-71 Identities = 505/727 (69%), Gaps = 15/727 (2%) Strand=Plus/Minus Query 33397 CCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 ||||||| | ||| | ||| || || |||||||||||| ||| | || ||||| Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| ||||| | || || || | ||| | ||||| ||||| |||||||| |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 | | || ||||| ||| | ||| ||| || | |||| ||||||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACA 483979 Query 33577 TCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 | || ||| || ||||| || || | |||||| || | || || || || || || Sbjct 483978 TTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAAT 483920 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || ||||| || ||||| || || |||||||| |||||||| || || | Sbjct 483919 GTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTA 483860 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC 33754 ||||| || || ||||| |||||||| ||||||| | || ||| || || | | || Sbjct 483859 AAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTC 483800 Query 33755 --ATGTATCCA--CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | ||||| | ||| ||||||||||||| || ||| ||||| ||||| | Sbjct 483799 GAAGAAATCCAAGCCATTG--CCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAA 483742 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | |||||||||||||| | | | || ||| |||| |||| |||| || | || || Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||||| || || | ||||| ||||| || ||||| || |||||||| | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 | |||| || |||||| | | || ||||| | | ||||||||| || || ||||| Sbjct 483621 CTGTAACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGG 483562 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTT 34047 || || || || || | |||||| || |||| | | ||| |||| ||| Sbjct 483561 AAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTC-GGTG--AGTC 483505 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | | ||| || | |||||||||| | ||| |||||||| || |||||||| || || | Sbjct 483504 TTTCCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTT 483445 Query 34108 CTGCCTT 34114 | ||||| Sbjct 483444 CGGCCTT 483438 >seq583 Length=2816 Score = 127 bits (140), Expect = 3e-24 Identities = 313/472 (66%), Gaps = 2/472 (0%) Strand=Plus/Minus Query 33266 GTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 33325 ||| | || || |||||| || || ||||| |||| ||||| || || || || || Sbjct 641 GTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAGAAGTT 582 Query 33326 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAt 33385 ||| || || |||| || ||||| ||||||||||| || ||||||| ||| |||||||| Sbjct 581 AGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTGTAAAT 522 Query 33386 ttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCAT 33445 || | | ||||| || || || | || || ||| | || | || ||||| Sbjct 521 CTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGATTCAT 462 Query 33446 CATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACA-GTAAGAAATTCTTGTT 33504 || ||| |||||| || | | | ||| || | ||| || | ||| | | |||||| Sbjct 461 CAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAGTACT-CTTGTT 403 Query 33505 CAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATA 33564 |||| || || | || |||||| || | || ||| || | | || Sbjct 402 CAATATCAACAGCCTCGGTCATAATACGCTCAATAATCTCACGACTGGGACGGTTCTCTA 343 Query 33565 AATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATT 33624 | || || | | ||| |||||||| ||||| |||||| ||||| ||| | | Sbjct 342 AGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAGCT 283 Query 33625 CGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGA 33684 | ||| || || | || ||||| | ||||||||| || | ||| || |||| ||||| Sbjct 282 CATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGCGA 223 Query 33685 ATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 |||| || ||||||| || || || ||||| || || | | |||||| Sbjct 222 ATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATCTCTC 171 >seq1394 Length=309634 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 28696 AATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 28755 |||||| ||||| || ||||| |||| |||||||| ||||| || || || || ||||| Sbjct 287882 AATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 287941 Query 28756 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 28803 ||||||| | || ||||| ||||| ||||||||||| | ||| || || Sbjct 287942 AATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804114030640