Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1348 416 3e-111 seq869 241 1e-58 >seq1348 Length=1847788 Score = 416 bits (460), Expect = 3e-111 Identities = 1203/1828 (66%), Gaps = 34/1828 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| |||| ||| | || | ||||||||||| ||||||||| || || Sbjct 1698162 TCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTC 1698221 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || || |||| | || ||||| || ||||| ||| |||| | || | Sbjct 1698222 TTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCG 1698281 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | ||||||||||||||||| || || || | |||||| |||||| Sbjct 1698282 GCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATT 1698341 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || | || || ||||||||||| ||||| |||| | ||||| | Sbjct 1698342 TGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATGTTTG 1698401 Query 37030 GGTAAATCTAA-ATG--TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| ||| ||| ||| || || || || | | |||| |||| || || ||| Sbjct 1698402 GGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCA 1698461 Query 37087 TTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | || ||| | || | | || ||| ||| | | | || |||| ||||| | | Sbjct 1698462 TCATCCCATAAAT--CAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGA 1698519 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | ||||| || || || | ||| || || ||||| || || ||||||| ||| |||| Sbjct 1698520 ATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCAT 1698579 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | || | || ||||| | || || || || |||||||| |||| ||| | ||| | Sbjct 1698580 TGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGC 1698639 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | |||||| | | ||| ||| || | || ||| | ||| || ||||| |||| Sbjct 1698640 GTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGT-GGGT 1698698 Query 37325 TCTTTAA-CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 |||| |||||||||||||||||| ||||| ||||| ||||| | || ||| || Sbjct 1698699 GTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGATAAGTT 1698758 Query 37384 TCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATT 37443 ||||| | || | ||| || | ||| ||||||| ||| | ||| ||||||| || Sbjct 1698759 TCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATA 1698818 Query 37444 GTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT 37503 ||||||||||| ||| |||||| | ||| | ||| || || | | || | || | Sbjct 1698819 GTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGCATT 1698878 Query 37504 AATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTA 37563 || || || ||| || |||||||||||||| ||||| || || | ||| | ||| Sbjct 1698879 AAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTG 1698938 Query 37564 GA---TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 || |||| | ||| || |||||| | ||||| || || ||||| || ||||| Sbjct 1698939 GACTTTCTA---GCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTC 1698995 Query 37621 TTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGT-TATTAT---- 37675 || | | ||| |||| || |||| || | ||| || || | || | || | Sbjct 1698996 TTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAA-ATCAA-AGGTCTTTTCTGGCG 1699053 Query 37676 TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC 37735 | ||||| || | | | ||| || | | |||||| ||||| | ||||| | | Sbjct 1699054 TGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAG 1699113 Query 37736 TAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGAT 37795 | ||| || ||||||||| || | || || | |||| || || | || || | Sbjct 1699114 AATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGT 1699173 Query 37796 TGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAG 37855 || ||| || |||| |||||| || | ||||| || || || ||| | ||||| Sbjct 1699174 TGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAG 1699233 Query 37856 CCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGAT-CGCTTTAAtttt-tttCTT 37913 | || || |||| ||| | | ||||| ||| | || || |||| ||||| Sbjct 1699234 CTTCAATTATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTCTT 1699293 Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATAATCCT 37971 |||| || | |||| |||| | || || | ||||| ||||| ||| | || Sbjct 1699294 --TTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGA--CCG 1699349 Query 37972 GGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAAT 38031 ||||||| | |||||||||||| ||||| || ||| || ||| || |||| |||||| Sbjct 1699350 GGACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAAC 1699409 Query 38032 AAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACA 38091 || || |||| ||| | ||| || | |||| ||| ||||| ||||| || || | Sbjct 1699410 AAGTCGGGTATCCACAGAGCATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTA 1699469 Query 38092 TTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGAC 38151 || || |||| | ||| || || ||||| | ||||| || || | |||||| | Sbjct 1699470 TTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCA 1699529 Query 38152 ATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATT 38211 | || || || | ||| |||| ||||||| || ||| | || || ||| | | Sbjct 1699530 AAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACC 1699589 Query 38212 CTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTA 38271 || | ||| ||||| | |||||| || |||||||| | ||| || |||| ||||| Sbjct 1699590 CTGAGCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTG 1699649 Query 38272 GCTCGTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCA 38330 || | ||| | | || || || || ||||| || ||| ||||| | || || Sbjct 1699650 GCCCTTAT-GCAGTGTACGTTTATGCCAATACCACCCGCCGATTTGGATATCATGGCACA 1699708 Query 38331 TTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 ||||| | | | || ||||| || ||| || || || | | || ||||| Sbjct 1699709 TTGTTCCACTGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACA 1699768 Query 38391 ACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGA 38449 |||| || || | || | || | || || |||||||| || ||||| | | Sbjct 1699769 CGACGACAACTGCGGTCTATTG-GTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAA 1699827 Query 38450 ACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAA 38509 | | || ||||| ||||||| ||||| || | ||| ||||| | || || | Sbjct 1699828 AATAACGCTCAGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTA 1699887 Query 38510 TACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTT 38569 |||||| || ||| ||||||| |||||| |||||||| || | || ||| |||| || Sbjct 1699888 TACCTATAGCTACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTT 1699947 Query 38570 TAAGTAGATACGATTTTTCTAATGTTTT 38597 | || | ||| ||| | || | |||||| Sbjct 1699948 TTAGCAAATAAGATCTCTCCAGTGTTTT 1699975 >seq869 Length=1271022 Score = 241 bits (266), Expect = 1e-58 Identities = 477/696 (69%), Gaps = 19/696 (3%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||||||||| | |||||||| ||||||||| ||||| | || || Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 || | |||| |||| | || |||| ||| || || ||||| ||| |||| || | Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAAT-----T 484025 Query 11584 T--ATAACTTCCT-TAGATGGTG--GATGTAATAAATGTTTAAACATTAA-ACACGCAAA 11637 | |||| | || | || | | | |||| ||||||||||||||||| ||| ||||| Sbjct 484024 TCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACA-GCAAA 483966 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||||||||||||||| || || | ||| | ||||| || ||||| | || ||||| Sbjct 483965 ATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCAT 483906 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 | || ||||| |||| |||||| || | |||||| ||| |||||| || ||||| Sbjct 483905 AAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCTC 483846 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGC-TAGATATCCATTT 11814 ||||| ||||| || | | | ||| ||| | | || || | ||| ||||| Sbjct 483845 TACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCGAAGAAATCCAAGC 483786 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 | |||||||| || || || || | ||| ||||| ||||| ||||| | || Sbjct 483785 CATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAGAT- 483727 Query 11875 CATTTTTTCTAT--ATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 | | || | | ||| | | ||| |||| |||| | |||||||||||| || Sbjct 483726 -AATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAG 483668 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || | ||||||||| || |||||||| ||||||||||| |||||||||| | ||||| Sbjct 483667 TGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACT 483608 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || | | || | ||| | | ||| ||||| ||||| ||||| || || || || Sbjct 483607 TCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAAA 483548 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 || || | |||| || || | || | | || | | | ||||| || | Sbjct 483547 GCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGGAGTTA 483488 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 ||||| || | |||||||||||| || ||||||||| Sbjct 483487 TCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAA 483452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514767712720