Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1348 585 3e-162 seq869 304 2e-77 seq1394 114 2e-20 seq583 107 3e-18 >seq1348 Length=1847788 Score = 585 bits (648), Expect = 3e-162 Identities = 1503/2268 (66%), Gaps = 32/2268 (1%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 || |||||||| | | || || ||||| || | | ||| ||||| || || |||| Sbjct 1698168 GTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAG 1698227 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| | || ||||| || || | |||| ||| | || || || | | Sbjct 1698228 CCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACA 1698287 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | |||||||||||||| ||||| || || | ||| |||||||||| |||| Sbjct 1698288 TGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATG 1698347 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 65077 | ||||| | ||| ||||||| ||||| || | || | || ||| || || | Sbjct 1698348 GTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTA-TATGTTTGGGTAT 1698406 Query 65078 GT-TTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 | || ||| || ||||| || | || | ||||| |||| || || ||||||| Sbjct 1698407 TTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATC 1698466 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 |||||| | ||||||||| || |||| | ||| |||| || || | |||||||| Sbjct 1698467 CCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCC 1698526 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 ||||| || | | ||||||||||||| ||| |||||||| | || ||||| || || Sbjct 1698527 CGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCC 1698586 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | |||||| || || || || || ||||| || || | | ||| ||| | | ||| Sbjct 1698587 TAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACC 1698646 Query 65315 GTATGTT--CTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 65372 ||||| |||||||| || || | | ||| ||||| | || | ||| Sbjct 1698647 --ATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTA 1698704 Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 65431 |||||| ||||| ||||| | | || | || ||| || || || Sbjct 1698705 TTCCACATATCATATTGTAGTATACCCTTACTTACTGGAC-AGCCGGGATAAGTTTCATA 1698763 Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 || || || || || || | ||||||||| || || || || || |||||||| ||||| Sbjct 1698764 TGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTC 1698823 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGGATAATTTAAGAGA 65549 ||| |||| | ||||| ||| || || || ||| | || ||| | | | Sbjct 1698824 GAAAATCTGTTGATTTAACAAAAATGCCTTTTCA--CTCTCATAGGGGTAACGCATTAAA 1698881 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609 || || | || || || || |||||||| ||||| ||||| | ||| | | ||| || Sbjct 1698882 ATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGAC 1698941 Query 65610 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 65669 || |||||| || | |||||| | || || || || ||||| |||||||| || | Sbjct 1698942 TTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTA 1699001 Query 65670 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACAAAC 65726 || ||||| |||| |||| ||| |||||||| || ||| | |||||| Sbjct 1699002 ATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTTTTCTGGCGTGACAAAC 1699061 Query 65727 ATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 65786 || || | |||| || |||| ||||||||| |||| ||||| || | | ||||| | Sbjct 1699062 ATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCT 1699121 Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 | ||||| ||||| | || || ||||| ||||| || | ||||| || || || || Sbjct 1699122 ACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTG 1699181 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 ||| || ||||| || || | || | || ||||| ||||||| |||| ||| || Sbjct 1699182 CGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATT 1699241 Query 65907 ATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA 65965 || || ||| | | |||| || | | |||| | | || || || |||| || Sbjct 1699242 ATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTT-CTTTTTCATA 1699300 Query 65966 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 66025 ||||||||| ||||||||| || |||||||||| | || || ||||||| | Sbjct 1699301 CTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTG 1699360 Query 66026 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 66085 |||||||| | ||||| || || | || | ||| ||||||||||| | || || || Sbjct 1699361 TGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTAT 1699420 Query 66086 CCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 66144 ||| ||||| ||| || | |||||||| |||||| || || || || ||||| || || | Sbjct 1699421 CCACAGAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTTA 1699479 Query 66145 GATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 66204 ||| | || | | |||||| ||||||| || ||||| || || || | | |||| Sbjct 1699480 AATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAG 1699539 Query 66205 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 66264 | |||||| || |||||||| | || | || || ||| | || || | ||||| Sbjct 1699540 GGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATTG 1699599 Query 66265 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT-- 66322 | | | |||||| || || || || || ||| || | | || | || | || Sbjct 1699600 GTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTGGCCCTTATGC 1699659 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 66382 | | || | || || || || || ||| ||| || || | || ||| ||| | Sbjct 1699660 AGT-GTACGT-TTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTGTTCCAC 1699717 Query 66383 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 66442 | | | || ||||| ||| ||| ||| |||| | | || ||||| |||| Sbjct 1699718 TGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACACGACGACAA 1699777 Query 66443 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 || | | | | || | || || || ||||| || || || ||||| | || Sbjct 1699778 CTGCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAATAACGCTC 1699837 Query 66503 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 66562 ||| | | ||| || || |||||||| || || ||||| | ||| || |||| || Sbjct 1699838 AGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATACCTATAGC 1699897 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 || | ||||||||| ||||| ||||| ||||| ||||| || ||||| | ||| || Sbjct 1699898 TACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTAGCAAATA 1699957 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| | |||| ||||| || || || |||||||| |||||| || || |||||||| Sbjct 1699958 AGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAAT 1700017 Query 66683 AACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAATACTTGAAATA 66740 ||| || | || || ||| | ||||||| |||||| | ||||| Sbjct 1700018 TGACGAATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGTATT--CGGAAATC 1700075 Query 66741 ATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCA 66800 | || || || ||| | | ||| ||| | | | | ||| || || || Sbjct 1700076 AATGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATAACCTCT 1700135 Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 |||| |||||| ||||||||||| | ||| || || || || | ||| || | ||| Sbjct 1700136 GAGAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCCAATATG 1700195 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 |||||||| ||| | |||||| | || ||||| | || || |||| | |||||| | Sbjct 1700196 GCATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTGTCCAGT 1700255 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGA 66980 ||| || || || ||| || | || | || ||||||| | || | ||| Sbjct 1700256 TCTTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGGA 1700315 Query 66981 TCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCA 67040 || | | ||| |||| ||||||||||||| ||| || || ||||| |||||||| Sbjct 1700316 TCAACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATTTTATCG 1700375 Query 67041 AACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 67087 || ||| || | ||||||| ||||| |||||||| ||||| | ||| Sbjct 1700376 AA-ATGTACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAATAATTT 1700422 >seq869 Length=1271022 Score = 304 bits (336), Expect = 2e-77 Identities = 506/724 (70%), Gaps = 9/724 (1%) Strand=Plus/Minus Query 35973 CCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 36032 ||||||| | ||| | ||| || ||||||||||||||| ||| | || ||||| Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 36033 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 36092 |||| ||||| | || || || | ||| | ||||| ||||| |||||||| |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 36093 CGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 36152 | || || ||||| || | | | ||| ||| || | | | ||||||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACA 483979 Query 36153 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 | || ||| || ||||| || |||| |||||| || | || || || ||||| || Sbjct 483978 TTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAAT 483920 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271 || || || ||||| || ||||| || || |||||||| ||||| ||||| ||| | Sbjct 483919 GTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTA 483860 Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-TGTC 36330 |||||||| || ||||| || ||||| ||||||| | || ||| || || | || Sbjct 483859 AAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTC 483800 Query 36331 --ATGTATCCA--CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | ||||| | ||| ||||||||||||| || ||| ||||| || || | Sbjct 483799 GAAGAAATCCAAGCCATTG--CCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAA 483742 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 |||||||||||||||| | | | || ||| |||| ||| ||||||| | || || Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 |||||||||| || || | ||||| ||||| |||||||| || |||||||| | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 | |||| ||||||||| | | || ||||| | | ||||||||| || || || || Sbjct 483621 CTGTAACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGG 483562 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTAT 36626 || || || || || | |||||| || |||| || || || ||| | | Sbjct 483561 AAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTT 483502 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| || | |||||||||| | ||| |||||||| || |||||||| || || || | Sbjct 483501 CCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGG 483442 Query 36687 CCTT 36690 |||| Sbjct 483441 CCTT 483438 >seq1394 Length=309634 Score = 114 bits (126), Expect = 2e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 31215 AATACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATA 31274 |||||||||||| || ||||| ||||| |||||||| |||||||| || || || ||||| Sbjct 287882 AATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 287941 Query 31275 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 31322 ||||||| | || ||||| ||||| ||||||||||| | ||| || || Sbjct 287942 AATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 >seq583 Length=2816 Score = 107 bits (118), Expect = 3e-18 Identities = 312/474 (66%), Gaps = 6/474 (1%) Strand=Plus/Minus Query 35842 GTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 35901 ||| | || || |||||| || || ||||| |||| ||||| || || || || || Sbjct 641 GTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAGAAGTT 582 Query 35902 AGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAt 35961 ||| ||||| | || || ||||| |||||||||||||| |||||| ||| || ||||| Sbjct 581 AGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTGTAAAT 522 Query 35962 ttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCAT 36021 || | | ||||| || || || | || || || | || | || ||||| Sbjct 521 CTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGATTCAT 462 Query 36022 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACA-GTAAGAAATTCTTGTT 36080 || ||| |||||| || | | | ||| || | ||| || | ||| | ||||||| Sbjct 461 CAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAG-TACTCTTGTT 403 Query 36081 CAATAGAGACCGCGTCTGTTATAATA-GAT-ATTACTGTTTCTTCACTCGGTGGATACAA 36138 ||||| || || || || |||||| | | | || | || ||| || | | | Sbjct 402 CAATATCAACAGCCTCGGTCATAATACGCTCAATA--ATCTCACGACTGGGACGGTTCTC 345 Query 36139 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 36198 ||| || || | | ||| |||||||| ||| | |||||| ||||| ||| | Sbjct 344 TAAGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAG 285 Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 || || || || | || ||||| | ||||||||| || | ||| || |||| || Sbjct 284 CTCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGC 225 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 36312 ||||| ||| ||||| | || || || || || || || | | |||||| Sbjct 224 GAATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATCTCTC 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158706874920