Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1348 246 3e-60 seq964 131 2e-25 seq1304 104 2e-17 seq1190 95.1 1e-14 >seq1348 Length=1847788 Score = 246 bits (272), Expect = 3e-60 Identities = 1061/1652 (64%), Gaps = 63/1652 (4%) Strand=Plus/Plus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 ||||||||||| | |||||| || || || | ||||| |||||||| ||||| Sbjct 1698165 ACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTT 1698224 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCC 152840 | ||| || |||| | || | || | || | || || | || | || |||||| Sbjct 1698225 AAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCC 1698284 Query 152841 A--TGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGT 152898 | |||| | || ||||||||||||||||| || || ||||| | || || ||||| | Sbjct 1698285 ACATGTATA--TTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTT 1698342 Query 152899 CGATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAA 152958 || || || || | | | ||||| | ||| |||| || | | Sbjct 1698343 GTATGGTGGTCTTAACG-------GAAATC--TCCCAAACTGTTTTGTATAGATCACGTA 1698393 Query 152959 TGTTGTCGGGAATTTCATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTCC 153018 | | | ||| ||||| ||||||| ||| || || || || | || || | || Sbjct 1698394 TATGTTTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTT 1698453 Query 153019 GCATACTACTTGTGTACAGAT-TCAA-TGCGATTAGATCATCGACCAAGTAGCGGTTGAC 153076 ||| | | | || | |||| | || ||| ||| | | ||| | | ||||| Sbjct 1698454 TCAT--TTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGAC 1698511 Query 153077 AACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAA 153136 ||| | ||||| |||||||| |||||||| | | |||| | |||||||||| Sbjct 1698512 AACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAA 1698571 Query 153137 CGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAA 153196 || || ||||| || ||||||||||||| || || ||||| || | ||||| Sbjct 1698572 GGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAA 1698631 Query 153197 CGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAACGA 153256 ||||| |||| || |||| || ||| |||||| | |||||||| ||| || Sbjct 1698632 AGAATTGCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTC 1698691 Query 153257 AGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGGC 153316 || ||| | |||||||| ||| ||||| | ||| || | || || | |||| Sbjct 1698692 TGTGGGTGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGG 1698751 Query 153317 AAACGTGCTATACG-GC--TCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGC 153373 | | || ||| | || || | || | ||| || |||| || || | ||| | Sbjct 1698752 ATAAGTTTCATATGTGCCATCTTTTTCGG---CCAATTCACAACTAGCTTCCAAAGCGCC 1698808 Query 153374 ATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGG 153433 || ||| | ||||||| ||||||||| || | |||| || || ||| | || || Sbjct 1698809 ATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGG 1698868 Query 153434 TATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATG 153493 |||| | | || | |||||| ||||| |||| || || || || |||||||| Sbjct 1698869 GTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATG 1698928 Query 153494 GCGCATATTAGAtttttttGCAGCTTC----AACAGGATAGAAATTGCGGTCGATAATTT 153549 |||| ||| || ||| | |||||| ||| ||||| || ||| |||||| |||| Sbjct 1698929 ACGCAAATTGGACTTTCT---AGCTTCGGGCAAC-GGATAAAAGTTGATGTCGATGATTT 1698984 Query 153550 TATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGT-- 153607 | || | | | | | | ||| ||| | ||| || |||||||| || Sbjct 1698985 TGTTGAGATTCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCT 1699044 Query 153608 -TCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGT 153666 | | ||| | | | || | |||||| || ||||| || ||||| || | || | Sbjct 1699045 TTTCTGGCGTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCAT 1699104 Query 153667 CGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAAT 153726 | ||||| |||||| ||| || || | || || |||||||| || || ||| ||| Sbjct 1699105 CAGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCC--AAT 1699162 Query 153727 TACTT--TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGT 153784 || || |||||||||||||| ||||| || ||||| | ||| || ||||| ||||| Sbjct 1699163 GTTTTGCTGGTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGT 1699222 Query 153785 TTCGGCTTGAATTTCTATAATAGTACGCATCAATGTGACCGCGGGCATTTGATCGCGAAA 153844 ||| ||||| ||| || |||| | | ||| | | | | | ||||| | | | Sbjct 1699223 TTCAACTTGAGCTTCAATTATAG--CAAACCAAAGAGCCTGAG---CTTTGACGGTGCGA 1699277 Query 153845 CTGGC----CCTT-GTCTTCGTAGTGTTTGTACCAGTATTCAAACTCATCA--CCAAACG 153897 |||| |||| | ||| || | | ||| | | ||| ||||| ||| |||||| Sbjct 1699278 TTGGCTTTTCCTTCTTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAAC- 1699336 Query 153898 TATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAA 153957 || | || ||||||||| || |||||||| || ||||| |||||||||| | Sbjct 1699337 -ATCCTGCAGACCGGGACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCA 1699395 Query 153958 CGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGT 154017 | || |||||| | ||||| | ||| || || | | || || | ||| | | Sbjct 1699396 CACGTTTCATAAACAAGTCGGGTATCCACAGAGCATAGAAAAGATCTCTGGCTCTATGCT 1699455 Query 154018 CTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTT 154077 |||| |||| | ||| | | || | || | || || ||||||| || | Sbjct 1699456 CTTCCTTGCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCT 1699515 Query 154078 CCACGTAAACTGCTTGAGCGCCTTTACGCTTG---CCGCCCTGATTTACGTGACGCACCA 154134 ||| |||| || || || || ||| || ||||||| || | || | | Sbjct 1699516 CCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGGGCTA 1699575 Query 154135 TATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAA 154194 |||||| || |||| ||||| |||| |||||| | | ||| |||||||| | || Sbjct 1699576 CATTGTTAAACACCCTGAGCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAA 1699635 Query 154195 T---CTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACC-GCCGCCGTGT 154250 | ||| || |||| | | || || |||||||| |||||||| |||||| | Sbjct 1699636 TGGAAGTGCCCTT--GGCC-CTTATGCAGTGTACGTTTATGCCAATACCACCCGCCG-AT 1699691 Query 154251 TTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCC 154310 ||||| |||||||| || | | || || || | ||||| ||| |||| || Sbjct 1699692 TTGGATATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATCGGCCACC 1699751 Query 154311 ATGGTCAATAGGAAACATGAACTCATCTGCGG 154342 |||||||||| |||||| || || |||||| Sbjct 1699752 ATGGTCAATAAGAAACACGACGACAACTGCGG 1699783 >seq964 Length=291957 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || |||||||| || ||||||| ||||| ||||||||||||||||||||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | |||||||||||| | |||| ||| || ||||| || || Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | || || | || || ||| Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| ||||| |||||||| Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 129 bits (142), Expect = 6e-25 Identities = 176/242 (73%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || ||||| | ||| ||||| | ||||| ||||||||||| ||||||||| Sbjct 215411 GCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGA 215352 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| | |||||||| ||| | || |||||||| ||||| || || Sbjct 215351 CAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGG 215292 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| |||| | ||| | | ||| | || || | || || | Sbjct 215291 AATACCCTCCTTATC-TTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGA 215233 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTA-TGTT 139774 |||||| ||| | |||||||| || || || || ||||| |||||||| ||| |||| Sbjct 215232 CCTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTTTTATTGTT 215173 Query 139775 TT 139776 || Sbjct 215172 TT 215171 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || ||||| || || || || | ||||| |||||||| || |||||||| Sbjct 215639 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 215580 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| | |||||| | ||||| |||||| | |||| |||||| ||||| || || Sbjct 215579 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 215520 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||| | |||| | | ||| | || || | ||||| | Sbjct 215519 GATTCCTTCTTTGTC-TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAA 215461 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || ||||| ||||| || || || || |||||||| Sbjct 215460 CTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || || | || ||||| ||||| ||||| || || Sbjct 217110 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 217051 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||| || |||||||| || |||||| |||||||||||| || || Sbjct 217050 CAAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGG 216991 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || |||||| |||| | || | || |||| || || || Sbjct 216990 AATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGAC 216931 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||||||||| ||||| ||||| ||||||||| Sbjct 216930 TTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCATA 216882 >seq1304 Length=336898 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| ||||| || ||| || |||| ||||| | ||||||||| Sbjct 274203 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCA 274262 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| |||||| ||||| || || || ||||||||||| |||||| || Sbjct 274263 GCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTG 274322 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||||| ||||| || || | ||| | ||||| || || || ||| Sbjct 274323 ACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTACCAGTTAAAGTT 274382 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 274383 TTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || ||||| | || || ||||||||||| || ||||| | || | Sbjct 186887 CGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCA 186828 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| ||||| | |||| |||||| ||||| || || || ||||||||| Sbjct 186827 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 186768 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | ||||||| ||||| ||||||| || | Sbjct 186767 TC-CTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGAT 186709 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 ||||| || || | ||||| || || || ||||| || Sbjct 186708 GGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATTGC 186670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053378029600