Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1348 643 2e-179 seq869 300 2e-76 seq583 125 1e-23 seq1394 96.9 5e-15 >seq1348 Length=1847788 Score = 643 bits (712), Expect = 2e-179 Identities = 1513/2263 (67%), Gaps = 22/2263 (1%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 || |||||||| | | || || ||||| || | | ||| ||||| || || |||| Sbjct 1698168 GTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAG 1698227 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| | |||||||| || || | |||| ||| | || || || | | Sbjct 1698228 CCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACA 1698287 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | |||||||||||||| ||||| || || | ||| |||||||||| |||| Sbjct 1698288 TGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATG 1698347 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 78956 | ||||| | ||| ||||||| ||||| || | || | || ||| || || | Sbjct 1698348 GTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTA-TATGTTTGGGTAT 1698406 Query 78957 GT-TTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 | || ||| || ||||| || | || | ||||| |||| || || || |||| Sbjct 1698407 TTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATC 1698466 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 |||||| | ||||||||| || |||| | ||| |||| || || | |||||||| Sbjct 1698467 CCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCC 1698526 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 ||||| || | | ||||||||||||| ||| || ||||| | |||||||| || || Sbjct 1698527 CGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCC 1698586 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | |||||| || || || || || ||||| || || | | ||| ||| | | ||| Sbjct 1698587 TAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACC 1698646 Query 79194 GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 | | |||||||| || || | | ||| | ||| | || | || ||| Sbjct 1698647 ATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTATT 1698706 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| | |||||||||||| ||||| ||||| | | || | || |||||||| | Sbjct 1698707 CCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGATAAGTTTCATATGT 1698766 Query 79314 TCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAA 79373 || || |||||||| ||||||||||| || || || || || |||||||| |||||||| Sbjct 1698767 GCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTCGAA 1698826 Query 79374 AATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAA 79433 ||||| | ||| | ||| | | || ||| | || ||| | | ||| || Sbjct 1698827 AATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGCATTAAAATCAA 1698886 Query 79434 CGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTC 79493 | || || || || |||||||| ||||| ||||| | ||| | | ||| || || Sbjct 1698887 AGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGACTTTCT 1698946 Query 79494 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTAC 79553 |||||| || | |||||| | || || || || ||||| ||||||||| || || || Sbjct 1698947 AGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTAATAAC 1699006 Query 79554 TTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTC-CATCT---ATTACAAACATGT 79609 ||| |||| || | ||| |||||||| ||| ||| | |||||||| | Sbjct 1699007 TTTTGTAACATTTTTCAATTTTTTGAAATCAAA-GGTCTTTTCTGGCGTGACAAACATAT 1699065 Query 79610 TCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTA 79669 | | || | || |||| ||||||||| |||| ||||| || | | ||||| || | Sbjct 1699066 TAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCTACAA 1699125 Query 79670 TTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 79729 | || ||||| | ||| || ||||||||||| || | ||||| || || || || || Sbjct 1699126 TCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTGCGGT 1699185 Query 79730 TACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 79789 | || ||||| || || | || | || ||||| ||||||| |||| ||| || || | Sbjct 1699186 TGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATTATAG 1699245 Query 79790 CTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTG 79849 | ||| | | |||| || | | ||| | | |||| |||| || | | Sbjct 1699246 CAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTCTTTTTCATACTTGG 1699305 Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909 |||| ||| ||||||||| || ||||||||||| | | || ||||||| || |||| Sbjct 1699306 TATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTGTGGAC 1699365 Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 |||| | ||||| || |||| || | || ||||||||||| | || || ||||| | Sbjct 1699366 ACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACA 1699425 Query 79970 GAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 80028 |||| ||| || |||||||||| ||||||||| || || || ||||| || || | ||| Sbjct 1699426 GAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTTAAATCC 1699484 Query 80029 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGT 80088 | || | | |||||| |||||||| || ||||| || || || | | || || ||| Sbjct 1699485 AAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGT 1699544 Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||| || |||||||| | || | || || ||| | || || | |||||| | Sbjct 1699545 TTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATTGGTACC 1699604 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 80206 | |||||| || || || || || ||| || | | || |||| | || | | Sbjct 1699605 AGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTGGCCCTTATGCAGT-G 1699663 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 || | || || || || || ||| ||| || || | || ||| ||| | | | Sbjct 1699664 TACGT-TTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTGTTCCACTGACT 1699722 Query 80267 CATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 80326 | || ||||| || ||| | | |||| | | || ||||| |||| || Sbjct 1699723 TGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACACGACGACAACTGCG 1699782 Query 80327 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 | | | | || | || || || ||||| || || || ||||| | ||||||| Sbjct 1699783 GTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAATAACGCTCAGACA 1699842 Query 80387 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACAC 80446 | ||| || || |||||||| || || ||||| | ||| || |||| || || | Sbjct 1699843 ACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATACCTATAGCTACTC 1699902 Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATT 80506 ||||||||| ||||| ||||| ||||| ||||| ||| ||||| | ||| |||||| Sbjct 1699903 TCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTAGCAAATAAGATC 1699962 Query 80507 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 80566 | |||| ||||| || || || |||||||| |||||| || || |||||||| || Sbjct 1699963 TCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAATTGACG 1700022 Query 80567 AGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTGATACTTGAAATAATCGG 80624 | || | || || ||| | ||||||| ||||| || | ||||| | || Sbjct 1700023 AATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGT-ATTC-GGAAATCAATGG 1700080 Query 80625 AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 80684 || || ||| | | ||||||| | | | | ||| || || || || Sbjct 1700081 CGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATAACCTCTGAGAA 1700140 Query 80685 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATA 80744 || |||||| ||||| ||||| | ||| || || || || | || || || |||||||| Sbjct 1700141 TACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCCAATATGGCATA 1700200 Query 80745 ATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTAC 80804 |||| ||| | |||||| | || ||||| | || || |||| | |||||| |||| Sbjct 1700201 ATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTGTCCAGTTCTTG 1700260 Query 80805 CGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTAT 80864 || || || ||| || | || | || ||||||| | || | ||||| | Sbjct 1700261 TGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGGATCAAC 1700320 Query 80865 ATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACAT 80924 | ||| |||| ||||||||||||| ||| || || || || |||||||| || || Sbjct 1700321 AAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATTTTATCGAA-AT 1700379 Query 80925 G-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 80966 | || | ||||||| ||||| |||||||| ||||| | ||| Sbjct 1700380 GTACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAATAATTT 1700422 >seq869 Length=1271022 Score = 300 bits (332), Expect = 2e-76 Identities = 505/724 (70%), Gaps = 9/724 (1%) Strand=Plus/Minus Query 49775 CCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||||||| | ||| | ||| || ||||||||||||||| ||| | || ||||| Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| ||||| | || || || | ||| | ||||| ||||| |||||||| |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 | || || ||||| ||| | ||| ||| || | || | ||||||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACA 483979 Query 49955 TCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 | || ||| || ||||| || || | |||||| || | || | || ||||| || Sbjct 483978 TTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAAT 483920 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || || || ||||| || ||||| || || |||||||| ||||| ||||| ||| | Sbjct 483919 GTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTA 483860 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC 50132 ||||| || || ||||| || ||||| |||| || | || ||| || | || | | || Sbjct 483859 AAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTC 483800 Query 50133 --ATGTATCCA--CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | ||||| | ||| ||||||||||||| || ||| ||||| ||||| | Sbjct 483799 GAAGAAATCCAAGCCATTG--CCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAA 483742 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | |||||||||||||| | | | || ||| |||| |||| |||| || | || || Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 |||||||||| || || | ||||| ||||| || ||||| || |||||||| | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | |||| || |||||| | | || ||||| | | ||||||||| || || || || Sbjct 483621 CTGTAACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGG 483562 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 || || || || || | |||||| || ||||| || ||| || ||| | | Sbjct 483561 AAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTT 483502 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| || | |||||||||| | |||||||||||| || |||||||| || || || | Sbjct 483501 CCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGG 483442 Query 50489 CCTT 50492 |||| Sbjct 483441 CCTT 483438 >seq583 Length=2816 Score = 125 bits (138), Expect = 1e-23 Identities = 311/467 (67%), Gaps = 4/467 (1%) Strand=Plus/Minus Query 49650 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 49709 || || |||||| || || ||||| |||| ||||| || || || || ||||| || Sbjct 635 TTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAGAAGTTAGTCTT 576 Query 49710 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 49769 || |||| || ||||| ||||||||||| || ||||||| ||| || ||||| || | Sbjct 575 ACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTGTAAATCTTCTC 516 Query 49770 AAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTC 49829 | ||||| || || || | || || || | || | || ||||||| || Sbjct 515 ATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGATTCATCAAATC 456 Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCA-GTAAGAAATTCTTGTTCAATGG 49888 | |||||| || | | | ||| || | ||| || | ||| | ||||||||||| Sbjct 455 AGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAG-TACTCTTGTTCAATAT 397 Query 49889 ATACCGCATCTGTTATAATA-GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGT 49947 || || || || |||||| | || || | || ||| || | | | ||| || Sbjct 396 CAACAGCCTCGGTCATAATACGCTC-AATAATCTCACGACTGGGACGGTTCTCTAAGTGA 338 Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 || | | ||| |||||||| ||||| |||||| ||||| ||| || || || Sbjct 337 GAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAGCTCATTA 278 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 || || | || ||||| | ||||||||| || | ||| || |||| || ||||| Sbjct 277 CTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGCGAATGAA 218 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| ||||||| || || || || || || || || | |||||| Sbjct 217 CCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATCTCTC 171 >seq1394 Length=309634 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 44990 AATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 45049 |||||| ||||| || ||||| |||| |||||||| ||||| || || || || ||||| Sbjct 287882 AATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 287941 Query 45050 AATATGTGTATTATCGGATATCCAAAATTTTGTATGAAGAACTCCTCC 45097 ||||||| | || || || ||||| ||||||||||| | ||| || || Sbjct 287942 AATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253420069320