Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq869 239 4e-58 seq583 123 2e-23 >seq869 Length=1271022 Score = 239 bits (264), Expect = 4e-58 Identities = 481/703 (68%), Gaps = 14/703 (2%) Strand=Plus/Minus Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || || | ||| || | ||| || ||||||| |||||||| | ||||||||| ||||| Sbjct 484147 AGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATC 484088 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 | || || || | || || | ||||| | ||| || ||| || || | ||| Sbjct 484087 AAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATA 484028 Query 13818 ATAATTGTAATAAT-CTCATTAGAA--GGAGGATATTTTAGATGTTTAAAAATTAA-ACA 13873 || | |||||| ||| | || ||| | | | | ||||||||| ||||| ||| Sbjct 484027 AT---TTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACA 483971 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 |||||||||||||| | |||||||| | || | || || || ||||| | || Sbjct 483970 -GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACC 483912 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | || ||||| |||| |||||| || | |||||| || |||||| || Sbjct 483911 AGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAAT 483852 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 ||||| || |||||||| || || | ||||| ||||| |||| ||| || || Sbjct 483851 ACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCGAAGAAAT 483792 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| | ||||| || | || |||| | ||| ||||||||||||||||| Sbjct 483791 CCAAGCCATTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAA 483732 Query 14114 TAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | ||| || || || | | ||| ||| || ||||||| || | ||||||||| Sbjct 483731 GAGATAATCACGCTGTTCACGATCCTT--AATATAACTATCAATTAGAATACTATACATT 483674 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 |||||||||| |||||||| || || ||||| ||||| || || | || || | | Sbjct 483673 TCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACT 483614 Query 14232 TGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 |||||||| ||| ||| | |||| | | ||||||||| || || ||||| ||| || Sbjct 483613 TGTACTTCTTGAGAGAAA-CGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGC 483555 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || || || | | | | ||| || | |||| | | | ||||| ||| ||| || Sbjct 483554 GAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTC 483495 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 ||| ||| ||||||||||||||||| || || ||||||||| Sbjct 483494 GGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAA 483452 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| ||||||||| |||||||||||| | |||| | || |||| |||| Sbjct 484389 TAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGATGAGAAGTTACACCCAATTTT 484330 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||||| |||| | ||||||||| || |||||||| |||| || || ||||| Sbjct 484329 TGATATTCACCAACTTTACGTTCAAAGAAATTTGTTTTACCATCCAAAGAGATCATTTCC 484270 Query 13644 ATAAAATCAAATGGATTT 13661 ||||| || |||||| Sbjct 484269 ATAAAGGGGAAGGGATTT 484252 >seq583 Length=2816 Score = 123 bits (136), Expect = 2e-23 Identities = 313/474 (66%), Gaps = 4/474 (1%) Strand=Plus/Minus Query 13551 TTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAG 13610 || ||||| | |||| ||||| || || || || |||||||| | || |||||| Sbjct 646 TTTTCGTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAG 587 Query 13611 AAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATA 13670 |||||||| ||||| ||| || ||||| ||||| ||||| || ||||| | | Sbjct 586 AAGTTAGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTG 527 Query 13671 AACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGA 13730 | | || ||| || | | | | ||| | ||||| | |||||| || ||| Sbjct 526 TAAATCTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGA 467 Query 13731 GACATTAAATCACAATTCATACCTATTAGTTTTACAGG--AATTATATTGGTTAAAAATT 13788 ||| |||||| ||||||||| | | | ||||| || || || || | | Sbjct 466 TTCATCAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGG--AAGTACT 409 Query 13789 CTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGAT 13848 ||| ||| ||| |||||||| | |||||| |||||||||| | ||| | | Sbjct 408 CTTGTTCAATATCAACAGCCTCGGTCATAATACGCTCAATAATCTCACGACTGGGACGGT 349 Query 13849 ATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAA 13908 | || || || | | ||| || |||||| || | ||||||||||| || Sbjct 348 TCTCTAAGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAA 289 Query 13909 TAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13968 |||| || || |||||||| || |||||||| || || || || ||||| || || | Sbjct 288 TAAGCTCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGG 229 Query 13969 CAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATC 14022 |||| ||||| || ||||| | ||||| || ||||| || || | ||||| Sbjct 228 CAGCGAATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717727824200