Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq869 206 3e-48 seq583 140 3e-28 >seq869 Length=1271022 Score = 206 bits (228), Expect = 3e-48 Identities = 471/696 (68%), Gaps = 16/696 (2%) Strand=Plus/Minus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 ||| || | ||| || ||||||| |||||||| | ||||||||| ||||| | || || Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 || | || || | ||||| | ||| || ||| || || | ||||| | Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATT---TC 484023 Query 13614 AATAATG-TCATTAGAA--GGAGGATATTTTAGATGTTTAAAAATTAA-ACACGCAAAAT 13669 |||||| || | || ||| | | | | ||||||||| ||||| ||| ||||||| Sbjct 484022 AATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACA-GCAAAAT 483964 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 ||||||| | |||||||| | || | || || || ||||| | || ||||| | Sbjct 483963 CACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCATAA 483904 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 || ||||| |||| |||||| || | ||| || || |||||| || ||||| | Sbjct 483903 GACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCTCTA 483844 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 | |||||||| || || | ||||| ||||| |||| ||| || ||||| Sbjct 483843 CAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCGAAGAAATCCAAGCCA 483784 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 | ||||| || | || |||| | ||| ||||| || ||||| || | || | Sbjct 483783 TTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAGATAAT 483724 Query 13910 CCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 | || || | | ||| ||| || ||||||| || | ||||||||||||||||| Sbjct 483723 CACGCTGTTCACGATCCTT--AATATAACTATCAATTAGAATACTATACATTTCAGAGTG 483666 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 || ||||| || || || ||||| ||||| ||||| | || |||| |||||| || Sbjct 483665 TACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTC 483606 Query 14028 C-GAGTAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085 ||| ||| | ||| | |||| |||||||| ||||| ||||| ||| || || || Sbjct 483605 TTGAGAGAAA-CGTTC-GACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAAA 483548 Query 14086 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA 14145 || | | | | ||| || | |||| | | | ||||| ||| ||| |||| | Sbjct 483547 GCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGGAGTTA 483488 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCaaaaa 14181 || ||||||||||||||||| || || ||||||||| Sbjct 483487 TCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAA 483452 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| ||||||||| |||||||||||| | |||| | || |||| |||| Sbjct 484389 TAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGATGAGAAGTTACACCCAATTTT 484330 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||||| |||| | |||||| || || |||||||| |||| || || ||||| Sbjct 484329 TGATATTCACCAACTTTACGTTCAAAGAAATTTGTTTTACCATCCAAAGAGATCATTTCC 484270 Query 13432 ATAAAATCGAATGGATTT 13449 ||||| ||| |||||| Sbjct 484269 ATAAAGGGGAAGGGATTT 484252 >seq583 Length=2816 Score = 140 bits (154), Expect = 3e-28 Identities = 314/472 (67%), Gaps = 0/472 (0%) Strand=Plus/Minus Query 13339 TTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAA 13398 || ||||| | |||| ||||| || || || || |||||||| | || ||||| Sbjct 646 TTTTCGTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAG 587 Query 13399 AAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATA 13458 |||||||| ||||| ||| || ||||| ||||| |||||||| ||||| | | | Sbjct 586 AAGTTAGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTG 527 Query 13459 AACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGA 13518 | | || ||| || | | | | ||| | ||||| | |||||| || ||| Sbjct 526 TAAATCTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGA 467 Query 13519 GACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCT 13578 ||| |||||| ||||||||| | | | ||||| | || | || | ||| Sbjct 466 TTCATCAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAGTACTCT 407 Query 13579 TTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATAT 13638 | ||| ||| ||||||||| | |||||| || |||||| ||| | ||| | | Sbjct 406 TGTTCAATATCAACAGCCTCGGTCATAATACGCTCAATAATCTCACGACTGGGACGGTTC 347 Query 13639 TTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13698 | || || || | | ||| || |||||| || | ||||||||||| |||| Sbjct 346 TCTAAGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATA 287 Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || || || |||||||| || |||||||| || || || || ||||| || || ||| Sbjct 286 AGCTCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCA 227 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTC 13810 |||||||| || ||||| | ||||| || ||||| || || | || || Sbjct 226 GCGAATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578552217320